Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1436 ATGGCGGAATGGGTTTCTGGTGATTCCTCCAACCACACTCCGGTACCGGCACCGGCACCGGCTTCTGATGACAAAAGTAGGGCTGATGAGGCGGAAGACGAAGTTCCAGAAGAAAAAGTTCCGGTTCCGGCACTGGCTCCGGCTCCTGATCACAAAAGTTGGGCTGATGAGGCGGAAGACGAAGTTCCAGAAGAAAAAGTTCCGGCTCCGGCTCCTGATCGCAAAAGTTGGGCTGATGAGGCGGAAGAACAAGCTCCAGAAGAAACAAGTGAGCCCACAGCGAGTTCGTCGACGGTCTCGTCGCTTAAAGTTGATGAATTAGCAATCGACGAGAGAAAGAAGAGTCCTAAGGTTTTGGACGAACCCGATGATTCCAATATCCAAGCGGTTACATCGGGCGATACTCCGTATACTTCAGCGAGTACATTTGAAGATTTAAATCTATCCCCAGAGTTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATCAGTTTGCCAATGATTTTGGACCCTCCTCACAAGGATTTGATCGCTCAGGCACATAACGGGTCTGGCAAGACAACTTGTTTTGTACTTGGGATGCTGAGTCGTGTTGATCCTAAGGTGCAAGCTCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACAGGGATTGGTTCTGAATGTGCCATTCCCACAGACAGCAGAGATTATATTCCAATGACAAAACGACCACCCATAATGACTCAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAGTGGATGTCATCTAAGAAGCTGGGTGTCAGCAGATTAAAAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCTTTGAGGATAATGAAGGAAATAGAAAAAGTCAATCTGCATTGTCAGGTTCTTCTTTTTTCGGCTACCTTTAACGACACTGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAAGATCATAATCAACTTTTTGTGAGGAAAGAAGAACTGTCTTTACAGGCAGTGAAGCAATACAAGGTGAAATGTCCTGATGAGCTCTCTAAGATTGATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGCATGTTGCATAAATCACTTGATGATTTGGGTTATGAGGTTACTTCCATACAAGGTGCTCTTGACAATAATGAGAGAGACAAGATTGTTAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCTACTGACGTTCTTGCTCGAGGTTTTGATCAGCAACAGGTGAATTTGGTTATCAATTACGATCTTCCTGTCAAACACACTGCTGAATATACCCGTGAACCAGAGCCTGATTACGAGGTATATTTGCACAGGGTTGGTAGGGCAGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACTTGATAAGTGGTGAAAGGGATGAAAATCTGATGGAAAAAATTGAGAAACATTTTGGCACCCGGGTAACTGAGGTCCAACAAAGAAATGTTGATGATTATAAACGCGCTCTTAAAGAGGCTGGTTTACTGCAATAA 1653 0.4356 MAEWVSGDSSNHTPVPAPAPASDDKSRADEAEDEVPEEKVPVPALAPAPDHKSWADEAEDEVPEEKVPAPAPDRKSWADEAEEQAPEETSEPTASSSTVSSLKVDELAIDERKKSPKVLDEPDDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILDPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLRKMGRYTGIGSECAIPTDSRDYIPMTKRPPIMTQVVIGTPGTIKKWMSSKKLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIEKVNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVRKEELSLQAVKQYKVKCPDELSKIDVIRDYIFEIGENVGQTIVFVRTRNSASMLHKSLDDLGYEVTSIQGALDNNERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISGERDENLMEKIEKHFGTRVTEVQQRNVDDYKRALKEAGLLQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1436 550 SMART ultradead3 161 367 IPR014001 -
Alju01g1436 550 MobiDBLite consensus disorder prediction 105 121 - -
Alju01g1436 550 Pfam Helicase conserved C-terminal domain 378 499 IPR001650 -
Alju01g1436 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 516 IPR027417 -
Alju01g1436 550 CDD DEADc_DDX19_DDX25 148 347 - -
Alju01g1436 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 547 IPR001650 -
Alju01g1436 550 Gene3D - 358 547 IPR027417 -
Alju01g1436 550 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 170 IPR014014 GO:0003724
Alju01g1436 550 CDD SF2_C_DEAD 364 508 - -
Alju01g1436 550 MobiDBLite consensus disorder prediction 88 103 - -
Alju01g1436 550 MobiDBLite consensus disorder prediction 52 82 - -
Alju01g1436 550 MobiDBLite consensus disorder prediction 1 142 - -
Alju01g1436 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 351 IPR014001 -
Alju01g1436 550 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 94 520 - -
Alju01g1436 550 MobiDBLite consensus disorder prediction 125 142 - -
Alju01g1436 550 MobiDBLite consensus disorder prediction 23 39 - -
Alju01g1436 550 Gene3D - 120 357 IPR027417 -
Alju01g1436 550 MobiDBLite consensus disorder prediction 1 16 - -
Alju01g1436 550 Pfam DEAD/DEAH box helicase 167 339 IPR011545 GO:0003676|GO:0005524
Alju01g1436 550 SMART helicmild6 406 499 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1436 Alju-ChrAlju01 11394089 11398919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1436 134 531 Eukaryotic Initiation Factors Gene Family AT1G72730 35.381 2.01e-67 222