Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1434 ATGGCGAATACTACGTCGGTCGCCACCGCTGCTGCTTCGCTTTACGTCGGCGATCTTCACCCTGAAATCACCGATGGTAAGCTGGTTGAAATATTCTCCGAGTTCAAGAGCCTTACATCTGTTCGGGTCTGTCGGGACTCCTCTACCGGCAGGTCGCTCTGTTACGGCTACGTCAACTTCGCCTCTCCTCAAGACGCAATTCGTGCTATTGAGGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTGATTCAACTAAAGGTGGCAAAGGGAATGTGTTTGTTAAGAACCTACCTGAATCAATAGAAAATGTGGGATTACAAGATTTGTTTCAAAAGTTTGGCATTATTTTGTCCTGCAAAGTTGTCATGTCTGAAGATGGAAAAAGCAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGAAGCTGAATGGCTCTACTGTTAAAGACAAGAAAATCTATGTTGTAAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCAAATCCTGATGCGAAATATACAAATTTATATTTCAAGAACTTGGACCCCAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTTGTCTTTTGGGAAAATTGTTAGCTTAGTTATTGCGAAGGATGACAGTGGGATTTCGAAAGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCTAAACGGGCAATGGAAGGAATGAATGGATCACAACTTGGTAGTATGCTTATCCCATTTTCTACCAAGAATTTCTGTTCAAAGATTCTATACGTAGCCAGGGCACAAAAGAAGGCCGAGCGTGAGATTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGGTATCAAATGTTTATGTGAAGAACATTGATGATGACGTAAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGAAAAGGTATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTACACCCCTGAGGAGGCTAATAAAGCTGTGAGCACATTTCATGGATATATGTTTCATCGCAAACCATTATATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCACAATTGCAGATTCAGCATGCACAGAGAATGGCAGGACTATCTGGACCTTCAATAGCTGTTCTTCCTGGCGGATATTCTCCTTATTATTATGCAGCTACTGGGGGGGTTCCACAGGTTCCTTCTCGACCTGGGCTGATGTATCAACCTTTGGGGTTCACACAAGGATGGAGGGCTAACAGCTTTGCACCTCCTACCAGACCATATCAACAGCCACTAGCACCTATGGTTTCCAATTCTACAAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCAAACAATTTCACAAGGAAATCTTCACTCCGGGACACATATGCCACAATTGCGACAGCCTTTTCAGTCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGCCGACAAAGTATGTGCCCAGTGGGCGCCAGTCTGAATTGGAGAAAGTATCTGGAGTCACCTCGGGTGGTAGCTCTTCAGTAGGATCTTCGGGATCAGAAGTGCTGCATAGCATGCTTGCTGCTGCTACTCTAGAGCAGCAGAAACAGATACTCGGCGAGCAACTGTACCCTCTTGTCGTTAAACTCAAGCCGGGCCTAGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAGGAAGCCGTGCAGGTGCTAAAGAACTCCAAGACTAAAGTTTCTGGCCAGGATGTACTTCATCCAAACTTCCTTTCTGCCGAAGTTGCCGTGAACTGA 1941 0.4415 MANTTSVATAAASLYVGDLHPEITDGKLVEIFSEFKSLTSVRVCRDSSTGRSLCYGYVNFASPQDAIRAIEVKNHSILNGKAIRIMWSNRDPDSTKGGKGNVFVKNLPESIENVGLQDLFQKFGIILSCKVVMSEDGKSKGYGYVQFQSEESANSAIEKLNGSTVKDKKIYVVKFVKKSDRILPNPDAKYTNLYFKNLDPKITEELLQEKFLSFGKIVSLVIAKDDSGISKGFGFVNYDNPDDAKRAMEGMNGSQLGSMLIPFSTKNFCSKILYVARAQKKAEREIILHHQFEEKRKEQILKYKVSNVYVKNIDDDVSDEELRNLFRACGSITSAVVMRDGKGISKGFGFVCFYTPEEANKAVSTFHGYMFHRKPLYVAIAQRKEDRQAQLQIQHAQRMAGLSGPSIAVLPGGYSPYYYAATGGVPQVPSRPGLMYQPLGFTQGWRANSFAPPTRPYQQPLAPMVSNSTRQNRQNRGRMNGQTISQGNLHSGTHMPQLRQPFQSVNSSKELSTQQRAGPTKYVPSGRQSELEKVSGVTSGGSSSVGSSGSEVLHSMLAAATLEQQKQILGEQLYPLVVKLKPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVQVLKNSKTKVSGQDVLHPNFLSAEVAVN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1434 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Alju01g1434 646 SUPERFAMILY RNA-binding domain, RBD 303 403 IPR035979 GO:0003676
Alju01g1434 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 280 IPR000504 GO:0003723
Alju01g1434 646 Gene3D - 287 392 IPR012677 -
Alju01g1434 646 FunFam Polyadenylate-binding protein 547 633 - -
Alju01g1434 646 PANTHER RNA BINDING PROTEIN 302 514 - -
Alju01g1434 646 Gene3D - 547 636 - -
Alju01g1434 646 CDD RRM4_I_PABPs 306 383 - -
Alju01g1434 646 MobiDBLite consensus disorder prediction 450 522 - -
Alju01g1434 646 FunFam Polyadenylate-binding protein 289 397 - -
Alju01g1434 646 Pfam Poly-adenylate binding protein, unique domain 556 621 IPR002004 GO:0003723
Alju01g1434 646 Gene3D - 181 286 IPR012677 -
Alju01g1434 646 SMART rrm1_1 307 379 IPR000504 GO:0003723
Alju01g1434 646 SMART rrm1_1 13 86 IPR000504 GO:0003723
Alju01g1434 646 SMART rrm1_1 192 264 IPR000504 GO:0003723
Alju01g1434 646 SMART rrm1_1 101 173 IPR000504 GO:0003723
Alju01g1434 646 Gene3D - 102 180 IPR012677 -
Alju01g1434 646 SMART poly_2 561 624 IPR002004 GO:0003723
Alju01g1434 646 MobiDBLite consensus disorder prediction 450 547 - -
Alju01g1434 646 SMART rrm2_1 307 379 IPR003954 GO:0003676
Alju01g1434 646 SMART rrm2_1 192 264 IPR003954 GO:0003676
Alju01g1434 646 SMART rrm2_1 101 173 IPR003954 GO:0003676
Alju01g1434 646 FunFam Polyadenylate-binding protein 101 181 - -
Alju01g1434 646 CDD RRM2_I_PABPs 98 172 IPR045305 -
Alju01g1434 646 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 622 IPR006515 GO:0003723
Alju01g1434 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Alju01g1434 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Alju01g1434 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Alju01g1434 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Alju01g1434 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Alju01g1434 646 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Alju01g1434 646 Gene3D - 3 101 IPR012677 -
Alju01g1434 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Alju01g1434 646 MobiDBLite consensus disorder prediction 531 547 - -
Alju01g1434 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Alju01g1434 646 FunFam Polyadenylate-binding protein 4 99 - -
Alju01g1434 646 SUPERFAMILY RNA-binding domain, RBD 182 258 IPR035979 GO:0003676
Alju01g1434 646 SUPERFAMILY PABC (PABP) domain 553 632 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1434 Alju-ChrAlju01 11375425 11379865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1434 12 644 Eukaryotic Initiation Factors Gene Family AT2G36660 51.334 0.0 606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1434 01 11375425 11379865 Alju03g2547 03 51910227 51914620 CCT
Alju01g1434 01 11375425 11379865 Alju01g1434 01 11375425 11379865 ECH