Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1426 ATGGATTGGGATTGGAGCATAAGACCTTCTGTTCCTCAAGCTGAGTCTTCCTCGTTTGGCTTCCTCAATAACTTTAACTACACTCCATATCCAGGAATGGGAGTGAAACAACCAGCAATGACAGAGAGTGAGCGACAAGGGTTGACTCCGGGAATGGACAAAGTAAACAATGGGAAGCAAGAACAACAGCAGAAGAGGAAGAAGAAGAGATTAACAAGCAAGCAGGTAGAGTCACTGGAGAAGAGTTTTGAGAAGGACAGAAAATTGGACGCAGATAGGAAGATGAAGCTGTCGAAGGAGGTAGGGTTGCCGCCACGCCAAGTAGCAGTTTGGTTCCAAAACAGGAGGGCTAGGTGGAAGGCAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACAGGACTTCGATGCCATCTACAAGGAAAAACAGAATCTTCAAGAAGAGGTTACGTTATTAAAAGCCATGTTGAGAAAGCAAGAATGTAGGACGACGCAGGCATCTGCAGATTATCTACAAATCTGGGGAAGAACGTAG 534 0.4551 MDWDWSIRPSVPQAESSSFGFLNNFNYTPYPGMGVKQPAMTESERQGLTPGMDKVNNGKQEQQQKRKKKRLTSKQVESLEKSFEKDRKLDADRKMKLSKEVGLPPRQVAVWFQNRRARWKAKQLEHLYDALKQDFDAIYKEKQNLQEEVTLLKAMLRKQECRTTQASADYLQIWGRT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1426 177 SMART HOX_1 64 126 IPR001356 GO:0003677
Alju01g1426 177 Gene3D - 24 124 - -
Alju01g1426 177 Pfam Homeodomain 65 120 IPR001356 GO:0003677
Alju01g1426 177 Coils Coil 114 162 - -
Alju01g1426 177 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Alju01g1426 177 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Alju01g1426 177 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Alju01g1426 177 MobiDBLite consensus disorder prediction 32 85 - -
Alju01g1426 177 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 161 IPR045224 GO:0003700
Alju01g1426 177 SUPERFAMILY Homeodomain-like 49 124 IPR009057 -
Alju01g1426 177 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Alju01g1426 177 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Alju01g1426 177 CDD homeodomain 71 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1426 Alju-ChrAlju01 11313889 11314736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1426 12 152 Homeobox Transcription Factor Family AT5G03790 52.083 2.25e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju01g1426 Homeodomain 1.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2536 03 51822239 51823470 Alju01g1426 01 11313889 11314736 CCT
Alju01g1426 01 11313889 11314736 Alju01g1426 01 11313889 11314736 ECH