Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1402 ATGAACCCGAACGACGAAGGTCAACCAAATTCTCCGAAGAGGTCGAAGGGTAAAGCTTGGGAGTCGGAGCAGGAAACATATGGGTTCTCTCCCATGGAATTAAGTTCTGGAGCGTTCGGAGATGCCTCAGCTAGTCTGTCAATGGCGGACATTGGCCTCTCTGGCCATTCTCCTTCGTCTTTGTATGATTCTCCTTTCATGGAGTTTAGAGCATTCTCAACCATGAGCCCGACGTCTCTGGCTTCGCCGCCTCCTGCTGCTCCTGTTAGTGATGAGAGAGCCCCTTCGGTACCAACAACTATTAAGGAGGAGGCTGGAGGTGAGTTTGAGAACGTGGATTTGCCACACCCGCTTGAGTGTTTACAGGAGAATCCAATTCCGCCATTTCTATGGAAAACTTACGATCTGGTGGATGATCCGTCTCTGGATCCGATCATATCATGGGGCTCGGCCGGTGCTAGTTTCGTGGTATGGGACCCTGTGGAATTTGCAAGGATCGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTCCGCCAGCTAAATACTTATGTGGGTATTGCTTTAACAAAGCCTGGAAAGGCTGCTGTGATCTCTGGGATTGAGAGATTGGCGACTAAAGGAATAGTTGGCCTGCTGAGTTTCTTCTGTTGTCTTCAGCAATTTGTATCCCAGGGGTTCCGCAAGATTGACCCTGATAAGTGGGAGTTTGCGAATGAAGGTTTCAAGCAAGGGAAGAGACATCTATTGAAGAACATACAAAGGCGCAGAACACTGCAATCCCAGCATGCTGGTAATGTTGGGCCATCCACTGAAGCAGGAAAGTCTGGAGTTGAGGTCGAGATAGAAAGACTGAGAAAGGAGAGAAGTATATTAGCCCAAGATTTGGTTGATTTGCAGCAACAACAGAGAAGGACTGTTCATCAGGCGGGACAAGTGAGCCAGAGGCTTGAATCTGCAGAGCAGAGACAGAGACAGATGGTTTCTTTCTTGGCCAAGTTATTTCAAAATTCTGCATTTTTATCCCGCCTGAGGCAACAGAAGGAATCGGCAGGTATAGGTTCTCCAAGAGTGAGAAGGAAGTTTGTCAAGCAGCACCAACATGAAACAGGAACATCAGAATCTTTGAATGAAGGGCAGATTGTAAAATACCAACCGGATTGGAGAGACATTACCAACCCTTCAGAAACACCTGTACCAAATCCAATTTCTACTGAACAGTCTCCTGAGTACCCTTCACATGGTTGGGCAACAGAACTTGGTTCAGTGGCAGAATATCCTTATGTGCAAGCTGATGTTGTATCAGATGAATTGGCTGCAACTAGTGAAATAATGACAGCTCCAGAGATTATAGGGGAAGGATCGTCAAGATTACAGCTTGAAGATCCTCTTTGGAAAGGGGAAAACGTCATGGGGCCTGATCAAGAAGTTATACCAGAGGATCTGAGCAGGGAGAAAAGTTTTTCAATATTTTATCCGCCTGAAACTGAAAGCGTTATTAAACAAGATGTATGGAACCCGGGCTTTAATGTTAGCGGTGCTACTTCTAGCTCTGTGAGTGAGCTGTGGGACAGTCCACTTCCAACCAATTATGAAGTGCCAGAGTTTGGAGTCCCAGGTGGCTTATCAGACCTCTGGGATATAAGCTGTATGCAAGAAACAGATAAGTGGCCAACTGATGAGTTCCCTCCAAATGAAACAGAAGGTCACGCTGATCGCCCAAAAGATTATTGA 1743 0.4624 MNPNDEGQPNSPKRSKGKAWESEQETYGFSPMELSSGAFGDASASLSMADIGLSGHSPSSLYDSPFMEFRAFSTMSPTSLASPPPAAPVSDERAPSVPTTIKEEAGGEFENVDLPHPLECLQENPIPPFLWKTYDLVDDPSLDPIISWGSAGASFVVWDPVEFARIVLPRNFKHNNFSSFVRQLNTYVGIALTKPGKAAVISGIERLATKGIVGLLSFFCCLQQFVSQGFRKIDPDKWEFANEGFKQGKRHLLKNIQRRRTLQSQHAGNVGPSTEAGKSGVEVEIERLRKERSILAQDLVDLQQQQRRTVHQAGQVSQRLESAEQRQRQMVSFLAKLFQNSAFLSRLRQQKESAGIGSPRVRRKFVKQHQHETGTSESLNEGQIVKYQPDWRDITNPSETPVPNPISTEQSPEYPSHGWATELGSVAEYPYVQADVVSDELAATSEIMTAPEIIGEGSSRLQLEDPLWKGENVMGPDQEVIPEDLSREKSFSIFYPPETESVIKQDVWNPGFNVSGATSSSVSELWDSPLPTNYEVPEFGVPGGLSDLWDISCMQETDKWPTDEFPPNETEGHADRPKDY 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1402 580 Pfam HSF-type DNA-binding 129 259 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g1402 580 SUPERFAMILY "Winged helix" DNA-binding domain 125 259 IPR036390 -
Alju01g1402 580 FunFam Heat stress transcription factor B-4 121 197 - -
Alju01g1402 580 SMART hsfneu3 125 259 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g1402 580 MobiDBLite consensus disorder prediction 557 580 - -
Alju01g1402 580 Coils Coil 285 305 - -
Alju01g1402 580 MobiDBLite consensus disorder prediction 1 34 - -
Alju01g1402 580 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 115 394 IPR027725 -
Alju01g1402 580 Gene3D - 121 260 IPR036388 -
Alju01g1402 580 PRINTS Heat shock factor (HSF) domain signature 129 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g1402 580 PRINTS Heat shock factor (HSF) domain signature 167 179 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g1402 580 PRINTS Heat shock factor (HSF) domain signature 180 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g1402 580 MobiDBLite consensus disorder prediction 562 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1402 Alju-ChrAlju01 11075194 11077505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1402 75 390 HSF AT5G03720 49.226 1.80e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju01g1402 HSF_DNA-bind 8.3e-27 CL0123