Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1400 ATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCCGGGTATCAAGAAACCCCGACTGACCGACGAGCTCGAGCGTGGCCCGAATTCCAGTCTTCGACCGTTTCCTCAGCGACAAGTGGCTTCTGGAGTTAATTCATTGGCACAGGCAAGGTTTAGGACAAATGACAGAGATTCCGAGAGCAGTGAGTCTGGTCGCGGTGGATACCAGCCCCAACCGCTCCACCAAGAGCTTGTCAATCAGTACAAAACAGCACTTGCTGAGCTAACATTCAATTCTAAACCGATAATTACCAACCTGACTATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCTATTGCTGGCACTGTTTGTGCTAACATTCTAGAGGTTCCAACTGAACAAAAGCTGCCGTCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTGGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATTCTTCTGTCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCCCGGACCCTCCAGATGATTGAGAAGGAGCTTGGCTTCACTCCTGCTGTCAATGGTTCATCTTCTGCATCTACACTGAGGAGTGATTCGCAGTCACAACGACCACAGCATAGCATCCACGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAGTCTGGCAGGAACATTCAGGGCTCTAATAGAGATTCGTCTAGTGATTCTGTTCCTGTAAAGGGCACTGATACATCCTATGGAGGCAATGAATATGGTTCTGAACTTTCAAGGAATTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCTGAGTTAGCACGTGACAAAGCTTGGTGCAAAGCAGGCAGCAATGCTGCAGACATTATGCCTGTTCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTATCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAACCAACACAAAGCTTAACTAGCATAAAGAGTAGGGTCTTGTCGACTAGCTGGAAAAATTCTGAGGAAGAGGAATACATGTGGGATGAGGTGAATGCAGGACTTACTGAGCATGGTGCATCCAATGTCTCTAACAACTTGAGCAAAGATTGTTGGACGGCTGATGATGACAATTCGGCTGTTGAAGGTCACCTCCAAAGCACATTCCATGAAGATAGAGATGTATCCACTGAAATGAAACGCCTACCTGCTTTTGGTCATCGGCCATCATTATCTTGGAAATCACAGCAGCAGTCGTTTGATGAGCTGAATCATAGGCCATGTTCTTCAGAAGGCACTGGATCCACTCTTGGTAGGTTGCCAAACATTATGAGTTCTTCTAATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCGGCAGGAGCGATGCAACAACAGCAATTTCATTCTATGGGAGCAGAGTCTCCTTCTTTGCAGTTGCCTTTGCGACAACAGTCTCCATCACCACCAGTTAGTGTGCACCATCCTCATCAAATGCGGGTTTTGGCTGAGCAAGACCATCCACAGACTCTTAAAATGTCTCAATTTTCAGGACGTCTACGGAACCAAGATATTCAAGATTCATTATCTGTCCTTCCACATACTGTTCAGGTTGGTAACTCACAGCAATCACATCAAAAGGAATTGCAGGGTCCATTGCCTTCAGTGTCTACTTTCCAGCCAAGGCATCATAATGCAGCTTCACAACCACAGCATCTTGGTTCTAATACTGAAGTGTCTGACATGAAGGAAAAGATGACCCACTCTAAAGAAACTTCAGAGCAGTCAACTACAAGTACTATTTTAGCTGCAGTTATGAAGAGTGGGATTTTCTCCGGCGGTCAGCCTGGTACAAGTTTCTTGGACAGAAGGAACCTTCCATTGAAATCAGGGGTTCAGCCTTCCCAGCCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGCCTGGGGTTGCATCTCCATCTCGATTAGGTCCTTCTAATGATGACTCATCTACTCTGCCAACAGAATCTCGAGGAAAGGTTGGAGCCCCATCAAGGCTGCCTGCTCTACCACCAGCTTCCTCTACTGTGAGTAGCGCCTCAGCCAAGACCTCCAATGCCACTCCTAATAAATCTAATCCAGTTTCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAAAAATAGATCCAGCTACTGAGGTGCCAGCTGGGGTGCTGAATCGATTGAAAGATCAGAGCCAAAGCATCACCACCAGTAGTACTTTGCCAGCTGTTTCAGTTACTGATTCTGCAACTGTTCCTGTTTTATCTACGGGAGATGATCAACTTGCAAAAGGTTCCTCCGGTCAATCAAATCCCGTGAAAATAAAAAATCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTCACCTGTGATCAGAGAACTATTCGATGATTTCCCTCATCATTGCAGCATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGTCATGCTATGAGAGAAAGAGAACACAGTGATGTATTGATGGCCTCAAGGAGATGGTATTTGAGGTCAAGTGACTGGGTTGTTGGCAAGGATGAAGTTTCATCTGAGTATGAGAGTATTGATTCCATAGATTTACATGGCAATAAATTGGAAAGAAGTGAAGAGGATGCTAAGGTTCCATCTGATGAAGATCAGTGCTTATGTTTGCTGTGTGGTGAGTTGTTCGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCAGTTTACCTACCTGTCTCCAGTAATGATAGCGAGATGTATATTAACATCGGTAGTAAAAGGGGTCCCATTGTTCACAGTTGGTGCTTAACGGAGAGCTCCATATCTAGCGCAGGTAAGGCATATGATCTGATGTTTGAGAAGTTAAGTTCTCTATATTGGATGGAGCAAGTCCACCATGATTGA 3042 0.4471 MDSSRRPFDRSREPGIKKPRLTDELERGPNSSLRPFPQRQVASGVNSLAQARFRTNDRDSESSESGRGGYQPQPLHQELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAGTVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAAGLPEVFCKAYRQVDSSVHSSMRHLFGTWKGVFPPRTLQMIEKELGFTPAVNGSSSASTLRSDSQSQRPQHSIHVNPKYLERQRLQQSGRNIQGSNRDSSSDSVPVKGTDTSYGGNEYGSELSRNSGLGIGRAGGRTSELARDKAWCKAGSNAADIMPVQRNGFSLKRSLSNHEAPKSINLDEHNQPTQSLTSIKSRVLSTSWKNSEEEEYMWDEVNAGLTEHGASNVSNNLSKDCWTADDDNSAVEGHLQSTFHEDRDVSTEMKRLPAFGHRPSLSWKSQQQSFDELNHRPCSSEGTGSTLGRLPNIMSSSNVKMGNRPFLSNATLGSAGAMQQQQFHSMGAESPSLQLPLRQQSPSPPVSVHHPHQMRVLAEQDHPQTLKMSQFSGRLRNQDIQDSLSVLPHTVQVGNSQQSHQKELQGPLPSVSTFQPRHHNAASQPQHLGSNTEVSDMKEKMTHSKETSEQSTTSTILAAVMKSGIFSGGQPGTSFLDRRNLPLKSGVQPSQPSGSSPTTSVSSGPGVASPSRLGPSNDDSSTLPTESRGKVGAPSRLPALPPASSTVSSASAKTSNATPNKSNPVSNLLSSLVAKGLISAKIDPATEVPAGVLNRLKDQSQSITTSSTLPAVSVTDSATVPVLSTGDDQLAKGSSGQSNPVKIKNLIGFEFKPSVIRELHSPVIRELFDDFPHHCSICGLRLKHQEQFNRHLECHAMREREHSDVLMASRRWYLRSSDWVVGKDEVSSEYESIDSIDLHGNKLERSEEDAKVPSDEDQCLCLLCGELFEDVYCQERDEWMFKGAVYLPVSSNDSEMYINIGSKRGPIVHSWCLTESSISSAGKAYDLMFEKLSSLYWMEQVHHD 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1400 1013 MobiDBLite consensus disorder prediction 428 467 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 486 516 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 206 227 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 653 697 - -
Alju01g1400 1013 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 1 27 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 206 279 - -
Alju01g1400 1013 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 61 990 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Alju01g1400 1013 MobiDBLite consensus disorder prediction 235 277 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 562 622 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 486 519 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 638 735 - -
Alju01g1400 1013 Gene3D - 72 200 IPR008942 -
Alju01g1400 1013 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 1 75 - -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 33 53 - -
Alju01g1400 1013 ProSitePatterns Zinc finger C2H2 type domain signature. 844 864 IPR013087 -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 710 735 - -
Alju01g1400 1013 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Alju01g1400 1013 Pfam CID domain 84 193 IPR006569 -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 429 467 - -
Alju01g1400 1013 CDD CID_Pcf11 80 192 IPR047415 -
Alju01g1400 1013 SMART 558neu5 78 200 IPR006569 -
Alju01g1400 1013 MobiDBLite consensus disorder prediction 562 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1400 Alju-ChrAlju01 11062187 11068955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1400 799 986 C2H2 Transcription Factor Family AT4G04885 33.854 1.38e-28 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1400 01 11062187 11068955 Alju01g1400 01 11062187 11068955 ECH