Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1388 ATGGACTTCCATCTCAAGCAATGGAAAAACCACCATCACTCTGAATCTGAAGACCAACATTTTGCAAAGATGCCCAGGCTCATGCTTGAATCTCATCTTCATTCTTCATCATCCCCCTCTTCCCATGCTCTTCCTCTTTCTGTACCTAAACTCAACTCCAAAGTCTGCTCCCTCTCCTCTTTTTCTGATTCCTCCTCATCATCCCCACCCAGATTTCCAAGAATGGGAAGTTATTTCAGTGTGGCTCAGTGGCAGGAGCTGGAGTTGCAGGCACTGATATTCAGGTACATGTTGGCGGGTGCTGCTGTTCCGCCTGAGCTTCTTCTGCCAATTAAGAAGAGCCTTCTTCATTCTGCTTCTTATTTCCTCCATTACCAGCCTTCTCTGTTGCAATCGGGATACTGGGCAGGAGCTCCCATGGATCCGGAGCCCGGCCGCTGCCGGAGGACAGACGGCAAGAAATGGCGGTGCTCTAGAGACGTGGTGACCGGCCAGAAGTACTGTGAACGGCACATGCATCGCGGTCGAAACCGTTCAAGAAAGCCTGTGGAAGTACCCACGCCAGCCACCGCGGAAGGCGTTGGCTCTGCCACCGCCGGCACCGGCTTCGGGTGTCCCTCTGCTACAACAGCCTCTGTATCTGCCCCGCACATAACTCCAACTGCGTTGAGATCCCCTTTCGATCTCCTTCAGCTGAATCGATGTTCATCTGGGACCATTAAGAATGAAAAAGAGAGCGTGTTTGAAAAACAAAGTCGAGATAATGTGGACGGTGAAGGGAGATCAGATGGGCATATTCTGCGACATTTTTTCGATGACTGGCCACGATCACTTCAGGAACCTGACAATGCCGAAAGTAACGCCAGCTCCATCAACTCGGCCACATGCCTCTCTATTTCAATGCCCGGAAAGGCTTCTTCGTCGGACGTGTCACTGAAATTGTCCACAGGCGACGATGCAGAGGATCCAAGTCCCAGAAGTGGGAATGTGGGCCCACAGAATTTGCAGTTGAATTGGGCAGGAGGATGGGCTTCTTCGGCTAATCATGTGGCCTCAATGGGTGGACCACTCGCAGAGGCCCTCCGATCATCCACCACAACGTCTTCGCCTACAAGTGTCTTACACCAGTTGCCTCGTGGTTCTGCATCTGAAACCAGCTTCATTAGTACCTAG 1173 0.5183 MDFHLKQWKNHHHSESEDQHFAKMPRLMLESHLHSSSSPSSHALPLSVPKLNSKVCSLSSFSDSSSSSPPRFPRMGSYFSVAQWQELELQALIFRYMLAGAAVPPELLLPIKKSLLHSASYFLHYQPSLLQSGYWAGAPMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVEVPTPATAEGVGSATAGTGFGCPSATTASVSAPHITPTALRSPFDLLQLNRCSSGTIKNEKESVFEKQSRDNVDGEGRSDGHILRHFFDDWPRSLQEPDNAESNASSINSATCLSISMPGKASSSDVSLKLSTGDDAEDPSPRSGNVGPQNLQLNWAGGWASSANHVASMGGPLAEALRSSTTTSSPTSVLHQLPRGSASETSFIST 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1388 390 ProSiteProfiles QLQ domain profile. 78 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju01g1388 390 MobiDBLite consensus disorder prediction 1 20 - -
Alju01g1388 390 MobiDBLite consensus disorder prediction 175 198 - -
Alju01g1388 390 SMART QLQ_2 77 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju01g1388 390 PANTHER GROWTH-REGULATING FACTOR 5 53 307 IPR031137 GO:0005634|GO:0006351|GO:0032502
Alju01g1388 390 MobiDBLite consensus disorder prediction 307 335 - -
Alju01g1388 390 Pfam QLQ 79 111 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju01g1388 390 MobiDBLite consensus disorder prediction 361 390 - -
Alju01g1388 390 MobiDBLite consensus disorder prediction 243 262 - -
Alju01g1388 390 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Alju01g1388 390 Pfam WRC 142 184 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1388 Alju-ChrAlju01 10948522 10950411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1388 1 377 GRF Transcription Factor Family AT3G52910 48.843 2.03e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Alju01g1388 WRC 4.9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1388 01 10948522 10950411 Alju03g2510 03 51562496 51568330 CCT
Alju01g1388 01 10948522 10950411 Alju01g1388 01 10948522 10950411 ECH