Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g1351 | ATGGCCTTGAAGAGGTTTCTGAAACCCATTGCTAAACCATCGCCCTCATCGCCGTCGCCGCCCCTTTCTCCGATTCCCAACCCTCCGCTCCCGGCCCCACCTATCACTTCTCCCTCCCCACTTCCTACTCTGACTCTTTCTCCCAGCTCCCACTATCATCGCCTCCTTCACTTCGTTAAGACCCATCTTACTCCTCCTTTCACACCAGACAGCCTTCTCCACTTCCTCAAATCCAAGCTCCATCACCATCCTAGTTTCTGCCTCTATGATTTTCATATCTTTAATTGGGCCTCCACTATCGACTCCTATCGCCACACCCACTCTACTTTCGAATGGATGGCTCGTACTCTCGCTATTACCAACCGCCTGGTCGAACTTCGAGATCTTCTCCAATTCATGACCTCCAATCCTTGCCCCTGCTCCGACGGTATCTTCTCTTGCTCTCGAACTGAGTCTATATTCCAGTTTTCGATTAACGCTTTTTGTAAAGCTCGGAAACTGGACGATGCTGTTTTCGCTTTTGAGTGTATGCGGAGATTGATTGATGGGAAACCTAATGTGGTGATTTGTAACTGCTTGATTCACGGGTTTGTAAAATGCGGCAGGCACGATAAAGCTTTGGAATTTTATGATAAAATGATAAGAGATAGAGTCAAGCCTGATGTGTTTACCTTTAATATTTTGATTAGTAGTTATTGTCGAAATTCACAGTTTGTAATGGCTCTGGATTTGTTCAAGGAGATGAGGGAAAAGGGATGCAATCCCAATGTGGTTACTTTTAATACCTTGATTAAGGGGTTCTTTAGGGAGCGGAAAATTGAAGAAGGGATTGAGATAGCTTACGAGATGATTGAATTGGGGTGTCAGCTCTCAAGCGTGACTTGTGAGATTTTAGTTGATGGACTTTGTAAGGAAGGTCAGGTTTTGCGAGCATGTGAGATATTGGCAGACTTGTCCAGCAAGAGACTTTTGCCCAATGGATATGATTATTTTGTTTTGGTGGAAGCTCTATGTGGTAAAGGTAATGTTCCTAGGGCATCGGAGCTTATTTATGAGCTATGGAACCAAGGAAATACCCCTAGCTTGATTGCTTGCACTATATTAATTGACGGTTTAAGGAGCTTGGGGAAGACTGAAGAAGCATTTAGATTTTCAGAAAAGATGCTTAAAGAAAATATAGTTTTGGATATTGTGACTTTCAATTCTGTTCTTCAGGACACTTGTCATATGCAAAGAACCGCAGATGCAAATAAGTTGAGATTGCTGGCTTCAAGAAAGGGTTTGAAACCAGATGGCATGACCTATAGAATTTTGGTTTCTGGGTATGCACGAGAGGGCAGTAAAAAGGAGGGAGAGTTAGTGTTAAATGAAATGTTGGATAGCGGATTTATATCTGATCTTGCTACATATAATAAATTAATGAATGGTTTCTCCAATTGA | 1440 | 0.4264 | MALKRFLKPIAKPSPSSPSPPLSPIPNPPLPAPPITSPSPLPTLTLSPSSHYHRLLHFVKTHLTPPFTPDSLLHFLKSKLHHHPSFCLYDFHIFNWASTIDSYRHTHSTFEWMARTLAITNRLVELRDLLQFMTSNPCPCSDGIFSCSRTESIFQFSINAFCKARKLDDAVFAFECMRRLIDGKPNVVICNCLIHGFVKCGRHDKALEFYDKMIRDRVKPDVFTFNILISSYCRNSQFVMALDLFKEMREKGCNPNVVTFNTLIKGFFRERKIEEGIEIAYEMIELGCQLSSVTCEILVDGLCKEGQVLRACEILADLSSKRLLPNGYDYFVLVEALCGKGNVPRASELIYELWNQGNTPSLIACTILIDGLRSLGKTEEAFRFSEKMLKENIVLDIVTFNSVLQDTCHMQRTADANKLRLLASRKGLKPDGMTYRILVSGYAREGSKKEGELVLNEMLDSGFISDLATYNKLMNGFSN | 479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g1351 | 479 | Gene3D | Tetratricopeptide repeat domain | 73 | 209 | IPR011990 | GO:0005515 | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Alju01g1351 | 479 | Pfam | PPR repeat | 188 | 217 | IPR002885 | - | |
| Alju01g1351 | 479 | Pfam | PPR repeat | 293 | 320 | IPR002885 | - | |
| Alju01g1351 | 479 | Pfam | PPR repeat | 158 | 179 | IPR002885 | - | |
| Alju01g1351 | 479 | Pfam | PPR repeat family | 220 | 266 | IPR002885 | - | |
| Alju01g1351 | 479 | Pfam | PPR repeat family | 360 | 409 | IPR002885 | - | |
| Alju01g1351 | 479 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 78 | 372 | - | - | |
| Alju01g1351 | 479 | Gene3D | Tetratricopeptide repeat domain | 210 | 324 | IPR011990 | GO:0005515 | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Alju01g1351 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Alju01g1351 | 479 | MobiDBLite | consensus disorder prediction | 13 | 38 | - | - | |
| Alju01g1351 | 479 | Pfam | Pentatricopeptide repeat domain | 424 | 477 | IPR002885 | - | |
| Alju01g1351 | 479 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Alju01g1351 | 479 | Gene3D | Tetratricopeptide repeat domain | 333 | 479 | IPR011990 | GO:0005515 | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 293 | 326 | IPR002885 | - | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 258 | 291 | IPR002885 | - | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 188 | 222 | IPR002885 | - | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 434 | 465 | IPR002885 | - | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 364 | 396 | IPR002885 | - | |
| Alju01g1351 | 479 | NCBIfam | pentatricopeptide repeat | 223 | 257 | IPR002885 | - | |
| Alju01g1351 | 479 | SUPERFAMILY | HCP-like | 168 | 253 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g1351 | 153 | 477 | Glycosyltransferase | AT1G05670 | 29.448 | 1.05e-44 | 165 |