Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1346 ATGTCCTCAATTCTCACAAAACCATCGCTAAATGCATCCCCTTTCCATTCTTCAATCCACAACCTAAAACTGAGACCCATATCCCCCCTTTTCCCCATTCAACGATTCCCTAGACTTCCCCACCTTCGAGTTTCCCTTCCAATCCATAACTCCGCCGATCGTCCTTCCATTACTCCTTCAAAGGGCAAAGCTTCCAATACTCTCTCACTTTCTCAGACTCTTCACTTCCTCAAACCCTGGCTTCTCTTTGAGCATAAAACCGTCCTCTTGGGCTGGCTCTGCAGCGTCATATCTGTTTACTCTCTCTCCAAAATCGTTTCTAAAGTCGGGAATGTTTATGCTACTATCAGCAGCATTGACGCTATCAAGTTGCGAGACGAAGGTTTAGTATTGGGGGGTTTGGTGATTGCCCGGTTGGTTGCAAGCTATGGGCAGCAAGCCTTTTTATGGGAAGCTGCGCTGAACGCTGTATATAAGCTTAGGATTCACGTTTTCGACAGGATTTTGCAGAGAGAATTGGGATATTTTGAAGGCAAGGGTGGTGTTTCATCAGGGGACATTGCGTATCGGATCACTGCGGAAGCTTCGGATATTGCTGATACTTTATATGCCCTGCTCAATACCGTAATTCCCAGCACTCTGCAGCTATCAGCTATGATGATGCGAATGTTGGTGATCAGTCCTGTCCTTTCATTGATTTCAGCTGCGATTATTCCTTGTATGGCACTTGTTGTTGCCTTTCTTGGTCAGAAACTTCGTTCAATATCTAGAAAGGCACATCTTAGCATTGCCACTCTCTCAGCATATCTAAATGAGGTCCTTCCTGCAATCCTTTTTGTGAAAGCAAACAATGCAGAACTGTGTGAGATTAGCAGGTTTAAGAGGCTGGCTAGGATTGACTTTTTTGAACGCCTGAACAAGAAGAGGATGAAGGCAGTTATTCCTCAGATTATACAAGCTATTTGTTTTGGAGTTCTATTTATACTTTGTGCTGGTTCAATAGTGGTTTCAAGAGGATCGTTCAATGGCTGTAACTTAGTTTCGTTTGTGACATCATTGCTGTTTTTGATTGAACCAATCCAGGATGTCGGAAAAGCATACAATGAATTGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGATCTGACCAGGTTCACAGATACGGCGGTTGAAAACCCAGATGCTGTTGATTTAGACTCTGTTAGAGGGGAGATAAAGTTTTGTAATGTCTCATTTAAGTACAGTGAAGACATGTCACTTGTTCTCAATGGATTAAATCTTCACATTGGAGCCGGAGAGATAGTTGCTCTTGTTGGTCCCTCTGGTGGAGGGAAAACAACACTTATCAAACTATTGCTTCGTCTTTATGATCCAGTATCTGGCTGTATACTTATTGATAATCATGACATCCAAAGCATTCGGTTGCAAAGTTTGAGAAGACATGTTAGTCTTGTTTCTCAGGATATAACACTTTTTTCAGGATCAGTTGCTGAGAACATTGGTTATAAGGATCTGACAGCAAAAATTGATATGGAGAGGGTAAAATATGCAGCACAAACTTCTAATGCTGATGAATTTATAAGAAAACTTCCAGAAGGATATAATACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGACAAAGGCAAAGGCTAGCCATTGCCAGAGCTCTATATAAGAATTCTTCTATATTAATACTGGATGAAGCAACTTCTGCTTTAGATAGCAAATCTGAGTTATTGGTGAGACAAGCTGTAGAGCGGTTGATGAAAAATCACACTGTGCTGATAATTGCCCATCGTATGGAAACAGTTCGGATGGCTAATCGAGTATTCCTCTTGGATAAGGGGAAGCTGGAAGAGTTGCCTCGTTCTACTATAATGGGGGGTCACAAGGACTCGTTGTTATCATCTGTTGTGGTGATTTAA 1935 0.4207 MSSILTKPSLNASPFHSSIHNLKLRPISPLFPIQRFPRLPHLRVSLPIHNSADRPSITPSKGKASNTLSLSQTLHFLKPWLLFEHKTVLLGWLCSVISVYSLSKIVSKVGNVYATISSIDAIKLRDEGLVLGGLVIARLVASYGQQAFLWEAALNAVYKLRIHVFDRILQRELGYFEGKGGVSSGDIAYRITAEASDIADTLYALLNTVIPSTLQLSAMMMRMLVISPVLSLISAAIIPCMALVVAFLGQKLRSISRKAHLSIATLSAYLNEVLPAILFVKANNAELCEISRFKRLARIDFFERLNKKRMKAVIPQIIQAICFGVLFILCAGSIVVSRGSFNGCNLVSFVTSLLFLIEPIQDVGKAYNELRQGEPAIERLFDLTRFTDTAVENPDAVDLDSVRGEIKFCNVSFKYSEDMSLVLNGLNLHIGAGEIVALVGPSGGGKTTLIKLLLRLYDPVSGCILIDNHDIQSIRLQSLRRHVSLVSQDITLFSGSVAENIGYKDLTAKIDMERVKYAAQTSNADEFIRKLPEGYNTNIGPRGSTLSGGQRQRLAIARALYKNSSILILDEATSALDSKSELLVRQAVERLMKNHTVLIIAHRMETVRMANRVFLLDKGKLEELPRSTIMGGHKDSLLSSVVVI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1346 644 ProSitePatterns ABC transporters family signature. 546 560 IPR017871 GO:0005524|GO:0016887
Alju01g1346 644 FunFam ABC transporter ATP-binding protein 399 640 - -
Alju01g1346 644 FunFam ABC transporter related 75 386 - -
Alju01g1346 644 Pfam ABC transporter 423 574 IPR003439 GO:0005524
Alju01g1346 644 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 116 623 IPR039421 -
Alju01g1346 644 SMART AAA_5 432 620 IPR003593 GO:0016887
Alju01g1346 644 CDD ABC_6TM_exporters 128 380 - -
Alju01g1346 644 Gene3D - 397 640 IPR027417 -
Alju01g1346 644 Gene3D ABC transporter type 1, transmembrane domain 60 385 IPR036640 GO:0005524|GO:0016020
Alju01g1346 644 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju01g1346 644 SUPERFAMILY ABC transporter transmembrane region 82 385 IPR036640 GO:0005524|GO:0016020
Alju01g1346 644 Pfam ABC transporter transmembrane region 129 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju01g1346 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 643 IPR003439 GO:0005524
Alju01g1346 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 624 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1346 Alju-ChrAlju01 10602197 10606245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1346 84 642 Calmodulin-binding Proteins AT2G36910 28.970 7.07e-55 201