Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1316 ATGGAACCAATCCAAAACATCAACGCGTGCAATAAACGCGCTTTCAACCCAGAGGAAGAAGAAGAGGACCAAAAGGAAGCCATGTTCGAGAAGGCGTTAACGCCCAGCGACGTGGGGAAGCTGAACCGTCTGGTGATCCCAAAACAGCACGCAGAGAAGTACTTCCCACTCAGCGGCGGTGGGGTCGGCGGCGACAACAAGGGCGTGTTGCTGAGTTTCGAGGACGAGTCCGGCAAGTTCTGGCGCTTCCGATACTCTTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGTCGTTACGTTAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCACCGTCACCTTACAGACACTCACCGCCTTTTCATCTGCTGGCGGCGCCGCCAACCTCATGCCGGTCCACCAGTCACCAGAGTTGGCCATGGCGCGGTGGGTGTAGGATGGACCACCCCAACACCTTTCTATTCTGGCCATACTTATCCCGAGCCTCAGCTTTTGTCACACCCACCTCAAACCCTTCCTGCACCAGGAAGTGGTTTACAAGCTCAGAGGACGGTGGTGGGAAACAGTTCAAGTAAGGTATTAAGACTGTTCGGAGTAAACATGGAATGCCAAGTAGAAGCAGATGAATCCGGACCGTCCACATCCCACAACTCCTTCAACGTCTCATCATCTACCCTTAACCATTTCTACCACTATGATTATCCTCATCTTTCTTATGCTTCCATTCCTCATCCCCACATGGTACGTCAACAGTCATACTTCTGA 786 0.5254 MEPIQNINACNKRAFNPEEEEEDQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYFPLSGGGVGGDNKGVLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDTHRLFICWRRRQPHAGPPVTRVGHGAVGVGWTTPTPFYSGHTYPEPQLLSHPPQTLPAPGSGLQAQRTVVGNSSSKVLRLFGVNMECQVEADESGPSTSHNSFNVSSSTLNHFYHYDYPHLSYASIPHPHMVRQQSYF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1316 261 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 221 IPR044800 GO:0003700
Alju01g1316 261 SMART B3_2 29 135 IPR003340 GO:0003677
Alju01g1316 261 CDD B3_DNA 28 125 IPR003340 GO:0003677
Alju01g1316 261 SUPERFAMILY DNA-binding pseudobarrel domain 25 135 IPR015300 -
Alju01g1316 261 ProSiteProfiles B3 DNA-binding domain profile. 29 135 IPR003340 GO:0003677
Alju01g1316 261 Gene3D - 23 139 IPR015300 -
Alju01g1316 261 Pfam B3 DNA binding domain 29 135 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1316 Alju-ChrAlju01 10359086 10360303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1316 22 222 RAV Transcription Factor Family AT5G06250 51.869 3.33e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju01g1316 B3 3.6e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1316 01 10359086 10360303 Alju03g2451 03 51141740 51143296 CCT
Alju01g1316 01 10359086 10360303 Alju01g1316 01 10359086 10360303 ECH