Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1281 ATGCAGTACAACCTCTGGAGCACAGTTAACTCCAACGCTGCGGCGGCGGCGAGTGATACCCCACGCTCTCAACAGGGTCTGTCCCTCAGCCTTTCCTCTCAGCAGGCAGGGATGGGCTCTTTCCGGGTCGACCGGGACGTACCATCACAGGGTCAGGCACCAACCATGTCAGGGGATGATGTTCGCGCGTCAGGTGGGTCATCGTCTTCGGCCTCTGGAGTTACTAATGGCGTTTCAGGGATACAGAGCGTGCTTCTGGGCTCTAAGTACTTGAAGGCAGCCCAGGAACTTCTAGACGAGGTCGTCAACGTCAACGTTGGGATAAAGAGCGAAATGGCCAAGAAAAGTAACAGCCAGACAAAGACGATTAAAGAGTCTTACGCGGCGGCAAGCGGAGACCGTTCCCCCGCCGGAGAAGGAACCGCCAAACCCAGCTCTGAGCTCTCAACCGTGGAGAAACAAGATATTCAAATGAGGAAGGCAAAGTTAATCAGCATGCTTGAAGAGGTGGAGCAGAGGTACAGGCAGTATCATCATCAGATGCAGATGGTGAGTTCTTCATTTGAACAAGCAGCAGGGATTGGGTCGGCGAGGACATACACAGCACTGGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAATGGGCCAAATTAGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTCGGCACAAAAATGGAAGGTTCGAGGCTTAAATACGTGGACCATCATCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTCTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCGCGAGTACGATTGTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCAAGAACGGAACGGTGGGGAGGAGAAATCAAGCAAGAGCACTGAAGATCCTGCAATGGCAGCCCCACCAGAGAGATCTCCAGCCTCTGCCACTGAACCCAAAAGCTTGAATTTCAAACATGACGTTTCCACAAATCCCAACACTCCAACAGTTTCAGTATCTACGCCGTCAACATCACCGGTCGGAGGAAATGCCAGAAACCGCCCAGGGTTCAGCTTCATGGGGACTTCAGAGCTAGATGGGATTGCACAACCGAGTCCCAAGAAACCGAGAAACCATGAGATTCTGCAGTCCCAAATTAACGTTGTTGATGTGAAGCCTGATGATGCAGGGAATGGTCAGATCTCCATGAAGTTTGGGGATGAGAGGCAGAGCAGAGATGGGTACTGTTTCATGGGAAATCAGACGAACTTCATTGGGGGATTTGGGCAATACCCAATTACAGAAATTGATAGGTTTGAGGCAGAGCAATTCACACCAAGGTTCTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACTCATTATCAGCGGCAACACATCAAACATTTCTACCAAACCAGAGCATTCAGCTTGGGAGAAGGATGGAGCTAGGTGAACCAAACGAATTTGGTGGCATAGACACTTCGACTGCTCTCTCTTCAGCTGCATTTGAGAATATGAATATGCAGAACCCAAAGAAGTTTGCTGCACGATTGTTGCCAGACTTTGTGGCCTGA 1755 0.5014 MQYNLWSTVNSNAAAAASDTPRSQQGLSLSLSSQQAGMGSFRVDRDVPSQGQAPTMSGDDVRASGGSSSSASGVTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNVGIKSEMAKKSNSQTKTIKESYAAASGDRSPAGEGTAKPSSELSTVEKQDIQMRKAKLISMLEEVEQRYRQYHHQMQMVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQIRAANKSLGEEDCFGTKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQERNGGEEKSSKSTEDPAMAAPPERSPASATEPKSLNFKHDVSTNPNTPTVSVSTPSTSPVGGNARNRPGFSFMGTSELDGIAQPSPKKPRNHEILQSQINVVDVKPDDAGNGQISMKFGDERQSRDGYCFMGNQTNFIGGFGQYPITEIDRFEAEQFTPRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGIDTSTALSSAAFENMNMQNPKKFAARLLPDFVA 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1281 584 Gene3D - 272 351 - -
Alju01g1281 584 MobiDBLite consensus disorder prediction 339 407 - -
Alju01g1281 584 MobiDBLite consensus disorder prediction 50 74 - -
Alju01g1281 584 MobiDBLite consensus disorder prediction 126 152 - -
Alju01g1281 584 SMART HOX_1 269 333 IPR001356 GO:0003677
Alju01g1281 584 MobiDBLite consensus disorder prediction 339 355 - -
Alju01g1281 584 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Alju01g1281 584 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Alju01g1281 584 SMART prehox3 79 221 IPR006563 -
Alju01g1281 584 SUPERFAMILY Homeodomain-like 270 336 IPR009057 -
Alju01g1281 584 CDD homeodomain 269 329 IPR001356 GO:0003677
Alju01g1281 584 MobiDBLite consensus disorder prediction 14 74 - -
Alju01g1281 584 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 355 - -
Alju01g1281 584 FunFam BEL1-like homeodomain protein 9 272 334 - -
Alju01g1281 584 MobiDBLite consensus disorder prediction 371 406 - -
Alju01g1281 584 MobiDBLite consensus disorder prediction 14 39 - -
Alju01g1281 584 Pfam Associated with HOX 84 220 IPR006563 -
Alju01g1281 584 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1281 Alju-ChrAlju01 10048707 10050754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1281 1 584 Homeobox Transcription Factor Family AT2G35940 51.347 3.00e-165 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju01g1281 POX 1.4e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1281 01 10048707 10050754 Alju03g2413 03 50756056 50760760 CCT
Alju01g1281 01 10048707 10050754 Alju01g1281 01 10048707 10050754 ECH