Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1280 ATGGATCAAGTTGAGATTCCTGAGTATTTCATATGCCCCATATCCCTCCAAATCATGAAAGATCCCGTTACTGCCGTTACGGGAATCACCTACGATCGTGAAAGCATCGAACGTTGGCTCTTCACCTCCAACAACACCACCTGCCCCGTAACCAAACAGACTCTTCCGTTAGACTCCGACTTGACCCCCAACCACACCCTCCGTCGTCTCATTCAGGCTTGGTGCACTCAGCATGCCTCCCTCGGCGTCGATCGTATTCCCACACCCAAACCTCCCCTCGACAAGTTTCAGGTCCTCAAAATCCTCTCCCACCTTCGCAGCCCTTACCTCTATCTCAAAGCTCTCCGACACTTAGAACTCCTCGCCGCCGAGAACGAGAGGAACAGGAAGTTTTTGGTGGAGGCTGGCGTACCCAAAGCCATGGTCTTGTTTATTTTGGACTGTTTTAAGAAACGACAGATTCGCGAGGGCTTCGAAGAGGCCCTCAGTTTGTTGCAGTTTGTTAAGATTCCCCCAGAGGAAATCAAGCTTCTCCTGCAACAAAACGATCAGGTCTTGGATTCTCTCACGTGGGTTTTAGGTTGTGAAATAATGGACAACTCTGTGACTGTCAAGTCCCACGCGATTACAGTGCTAAAAAATATCGTCCAGAAGGCCAGCTCCGGCGTCATGGAGAGACTGAAACCTGAGTTCTTTGAAACAATTGTGAAAGTCCTACGAAATGGAATAACCCTGCAAGGAATGAACGCTGGTCTGAAACTGCTATTAGCAGCTTGTGCGTGGGGAAGAAATCGAGAGTTAATGGTAAAGGCCGGTGCAGTTCATGAGTTGATTGAGATTGAGCTGGGCACGCCGGAGAAGAGAACGACCGAAATGATATTAGAAATACAGTTTCATCTGTGTTCTTGTGCGAATGGGAGAGCACAGTTCGCGAGTCACAGAGGCGGCATGGCGGTGTTGACGGAGAGAATCCTGAAGGTATCGCCAGCGGCGGATGAAAGAGCCATATTTGTTCTGTCATTGGTATCAAAGTCATCTGCTTCTCAAGTAATAATACAGGAAATGGTTCAGCTAGGGACTTTGTGTAAGCTTTGCATGTTGCTTCAGGCTGATCATCCTTCGTATCTAAAAGACAAAGCAATGGAGATTCTCAAGTCACATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTGCATCTTTTAACGCAAGTTTCCACAGATGA 1224 0.4779 MDQVEIPEYFICPISLQIMKDPVTAVTGITYDRESIERWLFTSNNTTCPVTKQTLPLDSDLTPNHTLRRLIQAWCTQHASLGVDRIPTPKPPLDKFQVLKILSHLRSPYLYLKALRHLELLAAENERNRKFLVEAGVPKAMVLFILDCFKKRQIREGFEEALSLLQFVKIPPEEIKLLLQQNDQVLDSLTWVLGCEIMDNSVTVKSHAITVLKNIVQKASSGVMERLKPEFFETIVKVLRNGITLQGMNAGLKLLLAACAWGRNRELMVKAGAVHELIEIELGTPEKRTTEMILEIQFHLCSCANGRAQFASHRGGMAVLTERILKVSPAADERAIFVLSLVSKSSASQVIIQEMVQLGTLCKLCMLLQADHPSYLKDKAMEILKSHSEVWKNSPCFPASFNASFHR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1280 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Alju01g1280 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Alju01g1280 407 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Alju01g1280 407 SUPERFAMILY ARM repeat 99 374 IPR016024 -
Alju01g1280 407 Gene3D - 96 394 IPR011989 -
Alju01g1280 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Alju01g1280 407 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Alju01g1280 407 SUPERFAMILY RING/U-box 3 82 - -
Alju01g1280 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
Alju01g1280 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1280 Alju-ChrAlju01 10041214 10042437 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1280 2 397 U-box Gene Family AT3G11840 43.537 6.61e-119 352