Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1278 ATGGAGGAGACTAGCAGGAGCAAGAACCCACCGACGGCGAAGCTCAGAGAAGCACCGACGACGACGACTGTTGCAGACAGCGCACCCTCTGAAGACGACCGTTGCAAACAAAGAGAACAAGCAACTAATTGGGGATTTGAATGTTATCTTCTCCCTCTACGATCTTCTTCTACTCCTTCAAGTACTTCATCTGATTCTAAACATCTTTTCTCTCAGATTCCACAGCAGACTTTTCAGATTTCAGACATGGACGAGAATATTGAAGTTCCTACCTTCTTTTTGTGCCCAATCTCCCTGGAAATCATGAAGGATCCGATCACCGTCTCCTCCGGGATCACCTACGACAGAGAGAACATCGAGAAATGGCTCTTCTCCAGCAAAAATAACACCTGCCCAGTTACCAAACTACCCCTCTCCGTATCAGACTCCTCCGACCTCCTTCCCAACCACACCCTTCGCCGTCTGATTCAATCCTGGTGTACCATCAACGCATCTCACGGCATCCAGAGGATCCCAACCCCTAAACCTCCCGTCACCAAAACCCAAGTAGCCAAAATCATCAAAGACGCTTCTCGATCTTCTCACTCATCACCTCTCAAATCCCTCCAAACACTCAAATCCATTGCTTCTGAGAGCGACGCCAATAAACGCACCATAGAAGCCGCCGGCGCCGTTGACTTCTTAGCATCCATCGTACTCCGACACACAAATTTCCCATACACCCCTGAAGACACTAGCCTCGATGGCGATAGCCTTGAGTTGAAAACAAGCGGAGGCGACGAAGCCTTAAGCATCCTCCATAGCCTCCACCTATCCGACTCTGGCTTCAAGACTCTCGTAACCTTCGAAAACGGATCATTCATTGACTGCTTAACCAGAATCATGCAGAGAGGATTCTATGAGTCACGAGCTTACGCGGTCTTACTGTTAAAATCCATGTTTGAAGTGGCTGATCCAACGGTTTTATCCCATTTAAAACCTGAAATGTTCGTTGAGTTGGTTCAACTTTTGAAAGACCAGATATCTCAGCAGGGTTCCAAGGCTGCTTTAAGAACACTGATCCAAATATGTCCATGGGGGAGAAACAGAATAAGAGCAGTCGAAGCAGGGGGCGTAACGGTGTTGATAGAGCTTCTTTTGGATTGTAAGGAGAGGAAGCCATGTGAGATGATGTTGGTGTTGTTGGAGATGTTGTGTGGGTGTGCTGATGGGAGGGCTGAGTTACTGAGTCATGGCGCGGGGATCGCCATAGTTTCAAAGAAGATTCTGAGGGTGTCGACGATGGCGAATGACAGGGCGGCGAGGATTCTGTTGTCTATTGCCAAGTTCTCTGCGACTACTAGCGTTTTGCAGGAAATGTTGCAGGTTGGGGTGGTGGCGAAGCTGTGTTTGGTGCTTCAGGTGGAGAGTGGGAGAAAGGCTCAGGAGAAAGCTAGAGAGATTCTAAGAATGCATTGTCGGGCTTGGAGGAATTCTCCATGCATACCAAGCAATCTGCTTTCTTCTTACCCGAATTGA 1518 0.4835 MEETSRSKNPPTAKLREAPTTTTVADSAPSEDDRCKQREQATNWGFECYLLPLRSSSTPSSTSSDSKHLFSQIPQQTFQISDMDENIEVPTFFLCPISLEIMKDPITVSSGITYDRENIEKWLFSSKNNTCPVTKLPLSVSDSSDLLPNHTLRRLIQSWCTINASHGIQRIPTPKPPVTKTQVAKIIKDASRSSHSSPLKSLQTLKSIASESDANKRTIEAAGAVDFLASIVLRHTNFPYTPEDTSLDGDSLELKTSGGDEALSILHSLHLSDSGFKTLVTFENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISQQGSKAALRTLIQICPWGRNRIRAVEAGGVTVLIELLLDCKERKPCEMMLVLLEMLCGCADGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATTSVLQEMLQVGVVAKLCLVLQVESGRKAQEKAREILRMHCRAWRNSPCIPSNLLSSYPN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1278 505 SUPERFAMILY ARM repeat 201 492 IPR016024 -
Alju01g1278 505 Gene3D - 183 497 IPR011989 -
Alju01g1278 505 MobiDBLite consensus disorder prediction 1 38 - -
Alju01g1278 505 ProSiteProfiles U-box domain profile. 88 166 IPR003613 GO:0004842|GO:0016567
Alju01g1278 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 170 IPR013083 -
Alju01g1278 505 MobiDBLite consensus disorder prediction 14 28 - -
Alju01g1278 505 PANTHER WDSAM1 PROTEIN 85 496 IPR045185 GO:0061630
Alju01g1278 505 SMART Ubox_2 92 159 IPR003613 GO:0004842|GO:0016567
Alju01g1278 505 FunFam RING-type E3 ubiquitin transferase 83 169 - -
Alju01g1278 505 Pfam U-box domain 89 161 IPR003613 GO:0004842|GO:0016567
Alju01g1278 505 CDD RING-Ubox_PUB 90 142 IPR045210 -
Alju01g1278 505 SUPERFAMILY RING/U-box 85 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1278 Alju-ChrAlju01 10019057 10023941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1278 83 504 U-box Gene Family AT2G35930 55.399 4.02e-167 477
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1278 01 10019057 10023941 Alju01g1278 01 10019057 10023941 ECH