Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1272 ATGCATCTGGACCAACCCAATTTGGCAAAGCAGGTCTTGAATGGTAATAGCATGGTGGATTCTTATTTTTCTCGGATGAATGACTTGTTCTCTGGCTCCTTCTCTCGCTTCCGGGGAGAGGAATCGTCGCTGGACCATCACCAGCACCATGTCATCGAGATGGGTTCCGTCGCTGCCTCCACCGGCGTCGGCAACCTCGACAAGTTCTTCGAGGACGTAGAATCTATAAAGGACGAGCTGAAAGAGCTCGAAAGACTGAACCAGAATCTGCAGAGCTCTCACGAGCAGAGCAAGACCCTTCACAATGCCAAGGCCGTCAAGGACCTTCGCTCTCGAATGGACGGCGACGTTGCTCTTGCTCTGAAGAAGGCCAAGCTCATCAAGATCAAATTGGAGGCACTGGAGCGATCCAACGCCGCCACCCGGAACCTTCCTGATTGCGGACCCGGTTCGTCATCGGACCGGACTCGGACATCCGTGGTGAACAGCTTGAAAAAGAACCTGAAGGACTCCATGGACAGTTTCAATGAACTCAGGCAGCGGATCTCCGCCGAGTACCGGGAGACCGTGCAACGCAGATATTTCACCGTCACCGGCGAGAATCCCGACGAGAAGACCGTCGACCTCCTGATTTCTACAGGTGAGAGTGAGACTTTCCTTCGTAAAGCCATCCAAGAACAAGGTAGAGGAAGAATACTGGACACGATCAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCCTGGACATGGCAGTGCTGTTGCAATCCCAAGGTGAGCAATTGGATGATATTGAGAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAGAGTGGGGCCCAGAAGCTACAGACGGCAAGGAAGCACCAGAAGAACACCAGGAAGTGGACCTGCTATGCCATTACGCTTCTGCTTGTGATCATCTTGATCGTGGTGCTCTTCACTGTGAGACCATGGCAAAATAATGGTGGTAGTTCGCCGTCGTCGTCACCACAAACACCTGCAGTTGCACCTCCGCCACCTCCTCCTCCTCCTCCTCCTTCCGGTTAA 1086 0.5276 MHLDQPNLAKQVLNGNSMVDSYFSRMNDLFSGSFSRFRGEESSLDHHQHHVIEMGSVAASTGVGNLDKFFEDVESIKDELKELERLNQNLQSSHEQSKTLHNAKAVKDLRSRMDGDVALALKKAKLIKIKLEALERSNAATRNLPDCGPGSSSDRTRTSVVNSLKKNLKDSMDSFNELRQRISAEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLRKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFLDMAVLLQSQGEQLDDIESHVARASSFVKSGAQKLQTARKHQKNTRKWTCYAITLLLVIILIVVLFTVRPWQNNGGSSPSSSPQTPAVAPPPPPPPPPPSG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1272 361 CDD SNARE_syntaxin1-like 235 297 - -
Alju01g1272 361 MobiDBLite consensus disorder prediction 344 361 - -
Alju01g1272 361 SMART tSNARE_6 231 298 IPR000727 -
Alju01g1272 361 Coils Coil 161 185 - -
Alju01g1272 361 ProSitePatterns Syntaxin / epimorphin family signature. 242 281 IPR006012 GO:0005484|GO:0006886|GO:0016020
Alju01g1272 361 Pfam SNARE domain 272 324 IPR000727 -
Alju01g1272 361 Gene3D - 233 329 - -
Alju01g1272 361 PANTHER SYNTAXIN 83 323 IPR045242 -
Alju01g1272 361 Coils Coil 236 259 - -
Alju01g1272 361 SUPERFAMILY t-snare proteins 65 291 IPR010989 GO:0016020|GO:0016192
Alju01g1272 361 SMART SynN_4 61 187 IPR006011 GO:0016020
Alju01g1272 361 Gene3D - 64 196 - -
Alju01g1272 361 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 63 193 - -
Alju01g1272 361 CDD SynN 66 223 IPR006011 GO:0016020
Alju01g1272 361 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 236 298 IPR000727 -
Alju01g1272 361 MobiDBLite consensus disorder prediction 333 361 - -
Alju01g1272 361 Coils Coil 66 103 - -
Alju01g1272 361 Pfam Syntaxin 68 271 IPR006011 GO:0016020
Alju01g1272 361 FunFam Syntaxin 132 229 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1272 Alju-ChrAlju01 9966326 9969359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1272 54 355 SNARE and Associated Proteins AT3G11820 71.753 1.62e-153 432