Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1269 ATGGCTTCCTCAACCGCTCCTTCCTCTTCCATCTGCAATCGACTCCACAGCCTCTACGTCACTCCTTCTTCCTTCTCAATTACCCTCAAATTCCCTCCCACGCCCATTTCTCATAAACCTCCCCATCTCAATCTCAAATCTCACTCCCTCAATTCCTCACCTCTCTCACTCTACCATCTTCGTTTGGCTTCTTCTGCTTTCGATGGATTCGAAGTCGCTCAAGACAGCACTAACGCCGAGCAGGTCGAAGAACCAGAAGCCGAACGCTCTCAAAATTCAGAACAAGAGGAGGATGACCCGAAGGTATCTGACTCAAACGAAGCTGGGAGGATCTACGTGGGAAATTTGCCCTTCTCAATGACTTCTTCTCAGTTATCCGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGTTGATGATGCCAAAGAAGCCATTCGGATGTTTGATGGCTCTCAAGTTGGAGGTAGGACGATGAAGGCAAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATACGCTGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCCTTTGCTGGTCAGCCTGGTTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACTGGAAGATCTCGAGGCTTCGGCTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAGGCTGCTTTGAATGGTATGAATGGTGTGGAAGTTCAAGGCAGGGCTCTGAGACTGAATTTGGCTGCAGATAGGACAAGCGGATCTCCTCCAACAACAGATGAAACTGCACAAGCTAGTGTGGATAGCTCGGAGTTGGTGTCTAGTGTGAGCGCATGA 957 0.4869 MASSTAPSSSICNRLHSLYVTPSSFSITLKFPPTPISHKPPHLNLKSHSLNSSPLSLYHLRLASSAFDGFEVAQDSTNAEQVEEPEAERSQNSEQEEDDPKVSDSNEAGRIYVGNLPFSMTSSQLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRTMKANFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNGMNGVEVQGRALRLNLAADRTSGSPPTTDETAQASVDSSELVSSVSA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1269 318 Gene3D - 198 298 IPR012677 -
Alju01g1269 318 CDD RRM1_PSRP2_like 110 189 - -
Alju01g1269 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Alju01g1269 318 CDD RRM2_NsCP33_like 213 288 - -
Alju01g1269 318 MobiDBLite consensus disorder prediction 291 318 - -
Alju01g1269 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Alju01g1269 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Alju01g1269 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Alju01g1269 318 MobiDBLite consensus disorder prediction 289 318 - -
Alju01g1269 318 MobiDBLite consensus disorder prediction 82 105 - -
Alju01g1269 318 PANTHER OS02G0815200 PROTEIN 37 291 - -
Alju01g1269 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Alju01g1269 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Alju01g1269 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Alju01g1269 318 SUPERFAMILY RNA-binding domain, RBD 106 186 IPR035979 GO:0003676
Alju01g1269 318 MobiDBLite consensus disorder prediction 73 107 - -
Alju01g1269 318 Gene3D - 65 191 IPR012677 -
Alju01g1269 318 SUPERFAMILY RNA-binding domain, RBD 209 295 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1269 Alju-ChrAlju01 9952716 9954149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1269 96 288 Eukaryotic Initiation Factors Gene Family AT3G16380 28.426 4.12e-18 82.8