Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1236 ATGTGGGGTCACTCTTTACCTACGCTTCAAAAGATTGTTATCGTATCGATGACTCAATGTTATGCAAGGGATGGAAACAAGACGCTCAGCCTCTTGAGATTGAGGATTGAGTTTGGACTTTGGGTCATCAGTCTGAACGATCAAGGTTGCGCCGCTCGCACTTTCCTGCATCTTGCATCCTTCGCCTATAGTCGTGTCTGGATGGAGTCTCAGGTGAAGCATGCCGTGGTTGTTAAGGTTATGGGTCGTACTGGTTCCCGAGGGCAGGTGACTCAGGTTAGAGTCAAGTTTTTGGATGATCACAACAGGTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTTCTCGAGTCTGAAAGAGAAGCAAGGAGATTGCGCTAG 399 0.4762 MWGHSLPTLQKIVIVSMTQCYARDGNKTLSLLRLRIEFGLWVISLNDQGCAARTFLHLASFAYSRVWMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1236 132 Pfam Ribosomal protein S28e 71 131 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju01g1236 132 FunFam 40S ribosomal protein S28 67 132 - -
Alju01g1236 132 CDD S1_S28E 73 132 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju01g1236 132 Gene3D - 67 132 IPR012340 -
Alju01g1236 132 PANTHER 40S RIBOSOMAL PROTEIN S28 68 132 IPR000289 GO:0003735|GO:0005840|GO:0006412
Alju01g1236 132 SUPERFAMILY Nucleic acid-binding proteins 68 132 IPR012340 -
Alju01g1236 132 ProSitePatterns Ribosomal protein S28e signature. 123 131 IPR028626 -
Alju01g1236 132 Coils Coil 121 132 - -
Alju01g1236 132 Hamap 30S ribosomal protein S28e [rps28e]. 68 132 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1236 Alju-ChrAlju01 9639772 9641975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1236 68 132 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 2.86e-36 117