Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1199 ATGGAGTTGGCCTTGAGCTTAGGGGACGCACCCAAGCCCTTCTCTTTTCTTGACAAGCTCACCAACATGCCCCGCCACGACCCCGCCTTTTGCATGCCACTCACCGCCGCCGCCGCTTTCTCTCCCAAAACGTGTCACCATCATACAGAGGCCCATGAAGATGGTCGCACTTCTTCTCCTCCGCCCATTCAGCTCCATCTTCTTCCCCTCACCCCACTTCCTCCAAGCCCTCCACGCCTTTCTATTCCTTGGCTCCCCCGTCCCTTGGGCGGTGAAGAGATTTCATCTGATAGAGTGGTGACTGCGAGGGGATTGGATGTGAACAGTGCGCCGGCAGAAGTAGATGAGGCCGACGACGCCGCTGCACTCTCATCTCCCAACAGTGAGATCTCGTCATTTCACTTGGATTTCCGCCTCAGAAATGGTCACGGCTCCGGCAGTTACAAGAGAGAACACGATGGCAACGCCGACAGACCCAGCGACGATGACGAAAACGGATCAAATCGCAAGAAACTCCGATTATCTAAGGAACAGTCTGCCTTCCTTGAAGAAAGCTTCAAAGAACACGCCACTCTCAATCCCAAGCAGAAACTTGCCCTGGCGAAGCAATTAAACCTTCGTCCTCGTCAAGTGGAAGTTTGGTTCCAAAATAGACGGGCTAGGACGAAATTGAAGCAGACGGAAGTAGACTGTGAGTATTTGAAGAGATGCTGCGAGACGCTGACGGAGGAGAATAGGAGGCTACAGAAGGAGGTGCAAGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTCGTTACTAAATCTTCAGCCGCCGGCACCACATCCACCGCGCTGGCAACTGCCACTAGTACAGGCAGTGCTTCTCGAATCCCAGTAGCTTTGTCTCTCGGAAAGCCTGGAATGCTTCCCTTCCCCAACGGTCAAGCCCAACCTCAACAGGCCCAGGCCCATCATACGGTTTCGTGA 1020 0.5373 MELALSLGDAPKPFSFLDKLTNMPRHDPAFCMPLTAAAAFSPKTCHHHTEAHEDGRTSSPPPIQLHLLPLTPLPPSPPRLSIPWLPRPLGGEEISSDRVVTARGLDVNSAPAEVDEADDAAALSSPNSEISSFHLDFRLRNGHGSGSYKREHDGNADRPSDDDENGSNRKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKTSQPYYMQLPATTLTMCPSCERVVTKSSAAGTTSTALATATSTGSASRIPVALSLGKPGMLPFPNGQAQPQQAQAHHTVS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1199 339 ProSiteProfiles 'Homeobox' domain profile. 165 225 IPR001356 GO:0003677
Alju01g1199 339 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 301 - -
Alju01g1199 339 SUPERFAMILY Homeodomain-like 158 226 IPR009057 -
Alju01g1199 339 Pfam Homeodomain 169 223 IPR001356 GO:0003677
Alju01g1199 339 Gene3D - 173 223 - -
Alju01g1199 339 Coils Coil 231 261 - -
Alju01g1199 339 CDD homeodomain 169 226 IPR001356 GO:0003677
Alju01g1199 339 SMART halz 225 268 IPR003106 GO:0006355|GO:0043565
Alju01g1199 339 ProSitePatterns 'Homeobox' domain signature. 200 223 IPR017970 GO:0000981|GO:0006355
Alju01g1199 339 MobiDBLite consensus disorder prediction 319 339 - -
Alju01g1199 339 MobiDBLite consensus disorder prediction 144 170 - -
Alju01g1199 339 Pfam Homeobox associated leucine zipper 225 259 IPR003106 GO:0006355|GO:0043565
Alju01g1199 339 FunFam Homeobox-leucine zipper protein 18 154 230 - -
Alju01g1199 339 Pfam HD-ZIP protein N terminus 58 133 IPR006712 GO:0005634
Alju01g1199 339 SMART HOX_1 167 229 IPR001356 GO:0003677
Alju01g1199 339 MobiDBLite consensus disorder prediction 324 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1199 Alju-ChrAlju01 9322427 9323748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1199 77 281 Homeobox Transcription Factor Family AT3G60390 58.036 3.01e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju01g1199 HD-ZIP_N 7.9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1199 01 9322427 9323748 Alju03g2341 03 50204288 50205587 CCT
Alju01g1199 01 9322427 9323748 Alju01g1199 01 9322427 9323748 ECH