Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1198 ATGGGGGAAGAGACATCGGACGCAATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCAGCTGGTTCCATAACCAATGAATCCGTGAGCTTAGAGGATTGGATTGAAGAACCTAGGGTCACCGAAGCAGTTAGACATAGGAGTCGACAGAGGTGGAGATGGCGGCATCTTCACATTAATCCTCCTGAACCCCATCGTAGCCTTTTTATTTCACCTGAGGCACATAGGGGTTTTATTATGGCGCCTGAAGCCCAACATATTTCAATGCGATTGAATCATTTGTTGGCCAGCCCTGGTAATGGAAGTGCGTTGCAGGCTGGGGAAGGCAGCGTGGCAGCTGAAGAAAGAACAGAGGTGACACCAAAAGCATGTGAAGCAAACAATGGTGTTATGGAGGATGAAGCATCAGATGAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGGAGCTTCTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGCTGGTCATGCCTCTATCGGTGGCTACATGTCCATTCAGAAGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACATTTAAAAATGTTACACCAATATATGGTCGTGGAAACAATGTCCGTGAACCTGAGGAAGATCCTACTCTTAAAGTCCCTCTTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCAGTTGCATTCCCAGTGGAAGAGATGATTCGGCGTCTTGGAAGTAGATTCGATCTCTCTCGAGATGTAGGCCAGCCAAATGAGCCTGACAATGCCAGGGAAGCAGCAACCACTACCTTGCTAAATAGATTTTTGACCTCTCGAGCTTTACGGAGAGAGCATATTCATGGGGCAGCTGCAGATGATGTAGTGGACTTAACTCAAAATAACATTAGTGGTCCTGAGGTAGGGGATAACCGCAGGGTTCAATCACTTTTACTTCGAAGAACACAGTCACATAGAACAACACTTTCTTCTCTTTCATCAGCTCTGAGTTCTGCAGAGAGATTTGTTGAGGCATATATCCGTAGCCATTCTATTGGTAGAAACCAAGAGCAGCCTCCGCCGGTCGATGACAGAGACTCCTTTTCAAGTGTTGCTGCTGTTATACACTCGGAGAGTCAAGTAGACACTGCTGTAGAAATTGACTCCATGGTGTCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCATCTCGGGTTTCTGATGTGGATAGTGGAGATTCTCGGGCTCCTAGGCGAAGACGTTTGAACTGA 1317 0.4647 MGEETSDAMNLDLNLGPDPEPAAGSITNESVSLEDWIEEPRVTEAVRHRSRQRWRWRHLHINPPEPHRSLFISPEAHRGFIMAPEAQHISMRLNHLLASPGNGSALQAGEGSVAAEERTEVTPKACEANNGVMEDEASDEKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWSCLYRWLHVHSEAKECPVCKGEVTFKNVTPIYGRGNNVREPEEDPTLKVPLRPHARRVESLRQTIHRNAVAFPVEEMIRRLGSRFDLSRDVGQPNEPDNAREAATTTLLNRFLTSRALRREHIHGAAADDVVDLTQNNISGPEVGDNRRVQSLLLRRTQSHRTTLSSLSSALSSAERFVEAYIRSHSIGRNQEQPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1198 438 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Alju01g1198 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 130 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Alju01g1198 438 MobiDBLite consensus disorder prediction 416 438 - -
Alju01g1198 438 MobiDBLite consensus disorder prediction 1 22 - -
Alju01g1198 438 SMART ring_2 157 197 IPR001841 -
Alju01g1198 438 CDD RING-HC_AtRMA-like 155 198 - -
Alju01g1198 438 SUPERFAMILY RING/U-box 153 210 - -
Alju01g1198 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 244 IPR013083 -
Alju01g1198 438 MobiDBLite consensus disorder prediction 128 147 - -
Alju01g1198 438 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Alju01g1198 438 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Alju01g1198 438 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Alju01g1198 438 MobiDBLite consensus disorder prediction 405 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1198 Alju-ChrAlju01 9308954 9310270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1198 1 429 C3H Transcription Factor Family AT3G58030 52.212 2.19e-131 384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1198 01 9308954 9310270 Alju01g1198 01 9308954 9310270 ECH