Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1185 ATGGATGCTCGTAAGAGAGGTAGGCCCGACGCTGGCATTAAAGTTAACGGTGGCTTCAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCTTTTGGCGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTACTCCTGCTGCTTCTAGAAATGTTGCAGCCCCACCACCGATTCATAATGGCTCCACTTCTGCTGTCAAATCTCGCATGTGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCGCATGGTGAATGGGAACTTGGCAAGCCTATTGCTGCTTCAGTAGAAGATCATCGTCCTATGGGACCTATTGCAGGCCGTATTGCTCCCAGCCGAATGGAGCCCCCACCTGGTCATGTGGCTAGTTTTGGTGCCAGTGCCAATGCCAAGATTAGTGTAGAATCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGTGTAAATTCCAAGCAGATCTGTCGCCAAACAGGAGCCAAACTATCGATTCGGGATCACGAGTCAGATCCAAATCTCAGAAATATTGAGCTTGAGGGAAGCTTTGAACAAATCCAGGAAGCTAGTAACATGGTGAAAGAGTTACTCGCAACCATCTCAATGTCCGCACCACCTAAAATCCCTGGTGTTCCTGGTGGCCCAGCCCCACCTGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTCGGAGAAAGATGTCACTTTGCTCATGGGGCTGCTGAACTGCGTAAAACAATAATTTCGATTGAATCCGTAGATTTTCTCATTAGGTTTGCTGAACTGGCTGAGAGGTCGGATAGTGGAAAAAATCACCCATTCAAAAGTGTGGTGGAGGAAACCAAACGGCTCATACATGAGGAGTGGAATGTAGAAATTGCTTATGCTAGTAGGGACATTTTGGTCTGTGCAGATTTTTTGGCAAAACGAGCACACTCGGAGGAAACTCAGCTTCTTTTCCTACCAGATGTTGCTATGGAATGTAGATCCTTCTTTCTGAAGGATTCGGAAGTTACAGAGGGGTATCTAACCTCCATAACTATCATTTAG 1185 0.4591 MDARKRGRPDAGIKVNGGFKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTPAASRNVAAPPPIHNGSTSAVKSRMCNKYNSAEGCKFGDKCHFAHGEWELGKPIAASVEDHRPMGPIAGRIAPSRMEPPPGHVASFGASANAKISVESSLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIQEASNMVKELLATISMSAPPKIPGVPGGPAPPGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKTIISIESVDFLIRFAELAERSDSGKNHPFKSVVEETKRLIHEEWNVEIAYASRDILVCADFLAKRAHSEETQLLFLPDVAMECRSFFLKDSEVTEGYLTSITII 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1185 394 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Alju01g1185 394 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Alju01g1185 394 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Alju01g1185 394 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Alju01g1185 394 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Alju01g1185 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Alju01g1185 394 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Alju01g1185 394 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Alju01g1185 394 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Alju01g1185 394 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 135 IPR045877 GO:0003729
Alju01g1185 394 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Alju01g1185 394 Gene3D - 92 130 - -
Alju01g1185 394 Gene3D - 260 291 - -
Alju01g1185 394 CDD KH-I_AtC3H36_like 170 235 - -
Alju01g1185 394 Pfam RNA-binding, Nab2-type zinc finger 111 124 - -
Alju01g1185 394 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Alju01g1185 394 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 237 IPR036612 GO:0003723
Alju01g1185 394 SUPERFAMILY CCCH zinc finger 258 290 IPR036855 GO:0046872
Alju01g1185 394 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Alju01g1185 394 SMART kh_6 166 236 IPR004087 GO:0003676
Alju01g1185 394 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Alju01g1185 394 Pfam KH domain 171 233 IPR004088 GO:0003723
Alju01g1185 394 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1185 Alju-ChrAlju01 9203218 9209947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g1185 KH_1 2.8e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1185 01 9203218 9209947 Alju03g2325 03 50097314 50100041 CCT