Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1179 ATGAACCAGAACATGATTGATTTCTCAGTGCGAGTTCAAGTTCAGCAGAGCCACGGCCTAAACGGGGATTCTAATTCTGAGTTTGGTAATAGTTATTGCGAATACATGGATATCAATCAGGCCTGGAATATGGGAAGTTGCAGCCAAACACTGGCCGTCACCGGAGGAGGAGGAGGAGCCCACCAACAGCCACCACCACCAAACCAAGGCCCTGCGAAATCCTCCGCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTTTACGCCACAGAACGATGCATGGGGTTTCAGGTTCAACAATATGATTCTCAGCTTGGTACCAATCCTTCTTTGACCTCTCAGTTTTCCAAGATGAACGACTTGGATTTCCCTCTTTATCAATCTGACCCCAGCTTTGAATTCTCCAATACCCTCCAAGCAATGGTGAAATCTCCATTGAGTAGTAGTAACCAATACAGTAGATTCCCAGAAAAATCCAATAAATTTTCTTATGGGAATCTGCCGACCACCAAGTTTCTTCCTATTCAACAACGCAGCTTGTTTATTAACGATGTTGCCTCAGTTAAGAGAAATCAAGATCATACGGCAAGTGCATATAATTTACATGTTGATCAGATGAGTTTCTCTTCTTCTCAGCAAGAGAAGCTGAATCCACCAGTTACATCAGAAGGGAGTGTGTCAGCTGGTTCTGGCAACCAGGGTTCCACTGGGACAGCAGCCACATCATCAAGCAAAACACGTATTAGGTGGAACCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAGGCGACACCAAAAGCTATATTGAAGCTGATGGACTCCGATGGATTGACCATCTTCCATGTGAAGAGTCATTTGCAGAAATATAGAACTGCAAAATACATGCCAGACTCAGCTCAAGGAAAGTCTGATAACAGACCCAATGTAGAAGATGTGCATCATCTTGACACCAAAACTGGGTTGCAGTTAAGAGAGGCACTTCAGCTGCAGTTAGACGTTCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGGAAGTTGCAGTTGAGAATTGAGGAACAGGGGAGGCAGCTGAAGATGATGTTTGATCAGGCAGCAAAAGACGAGTAG 1140 0.4491 MNQNMIDFSVRVQVQQSHGLNGDSNSEFGNSYCEYMDINQAWNMGSCSQTLAVTGGGGGAHQQPPPPNQGPAKSSATIMSRFESPASAFYATERCMGFQVQQYDSQLGTNPSLTSQFSKMNDLDFPLYQSDPSFEFSNTLQAMVKSPLSSSNQYSRFPEKSNKFSYGNLPTTKFLPIQQRSLFINDVASVKRNQDHTASAYNLHVDQMSFSSSQQEKLNPPVTSEGSVSAGSGNQGSTGTAATSSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVKSHLQKYRTAKYMPDSAQGKSDNRPNVEDVHHLDTKTGLQLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGRQLKMMFDQAAKDE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1179 379 Coils Coil 334 354 - -
Alju01g1179 379 Gene3D - 246 305 - -
Alju01g1179 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 223 376 IPR044848 GO:0003700
Alju01g1179 379 MobiDBLite consensus disorder prediction 54 76 - -
Alju01g1179 379 Pfam MYB-CC type transfactor, LHEQLE motif 332 377 IPR025756 -
Alju01g1179 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Alju01g1179 379 FunFam Myb family transcription factor 246 304 - -
Alju01g1179 379 SUPERFAMILY Homeodomain-like 245 301 IPR009057 -
Alju01g1179 379 MobiDBLite consensus disorder prediction 211 248 - -
Alju01g1179 379 Pfam Myb-like DNA-binding domain 251 300 IPR001005 -
Alju01g1179 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1179 Alju-ChrAlju01 9151408 9153148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1179 241 377 G2-like Transcription Factor Family AT3G04450 56.738 2.79e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju01g1179 Myb_DNA-binding 1.8e-05 CL0123