Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1178 ATGCGACTGCCTCCTCCTTTGCACTATCTGTCTCCGTTGCAAGATAGCCATCGTACCCTCTCAGCTGCAAAACTAGTCGAGATGACGTCGTTTGTGATCACGGTCGAATTCATCAGTCTCGCCTTCTATAACTACCACCGCTTCCGTTTCATCAGAAATCTTGAAGCTATATTCTTGAGCTTCTTATTTGTGGAGTTTCTTGAGTATTTTGAGGCTACGTTGTTATTGGTGCCATGTTTGAGATGAAGTGCCCTCTTGCTTTGTGGGTTTAATCCTGAAAATTGTCAACTTCCATTTGCAAATCATGGGCATGTTATTTTAGCAGATCCTTCCCCATCTTACTTTATCCAATCAGCAGCATTGAAGTTCGTTGCTTCATTGATTTACCTGGCCAAAAGCTTCATTCCATCAGAAATGGTGGAGCGGAGAGGAGGAACCGAACAAGAGATGGACGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGCAACGGCGATGCTTCTTCGAAGGAAGAGCTTCGCTTTCTCCTGGACCCGCTGGCCAAACCCCAACTTGTTGATCTCCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCAGAAACCTTGTGTGCTGCATTTCTAGAACATGGAGAAATTGAGGAAGGGGCTGTTATCTATGATAAAGCAACAGGAAAATCCCGTGGCTATGGCTTCATCACTTACAAACATATGGAATCAACTCATCATGCATTAAGAGGACCGAGCAAGTTAATTGATGGCAGGTTGGCTGTCTGTAATTTAGCTTGTGAGGGCCTAAGCGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAAATGTTGCTCAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTCACATACAAGACTGCAGAAGCTGCGAAGAAGGCAATAGATGATCCAGAAAAGGCTCTTGGGGGGAGAAATATAATTGTAAAATATGCGGATTCCCACAAGGGGAAAACAGGGCAGCCATCAGTGGTTCCAATGACAGCCTTACCAATGGCTCCTGGATATGTGCAGATGCAGCATGTCAAAACACATATTACCAACCCCCAAGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACCTTCTTATCCAAGTCCTCCCGCGGCAGCCGCACCTTATCCTTCAGTTTCTGGGAAGTCAACTCCGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGCAATAA 1404 0.4487 MRLPPPLHYLSPLQDSHRTLSAAKLVEMTSFVITVEFISLAFYNYHRFRFIRNLEAIFLSFLFVEFLEYFEATLLLVPCLRXSALLLCGFNPENCQLPFANHGHVILADPSPSYFIQSAALKFVASLIYLAKSFIPSEMVERRGGTEQEMDDFKKRKLEEAGNGDASSKEELRFLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFLEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHHALRGPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKALGGRNIIVKYADSHKGKTGQPSVVPMTALPMAPGYVQMQHVKTHITNPQVGYNYPQTVASYPAPSYPSPPAAAAPYPSVSGKSTPPVGMNNYPYYYPKQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1178 467 FunFam UBP1-associated protein 2C 291 389 - -
Alju01g1178 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 281 IPR000504 GO:0003723
Alju01g1178 467 CDD RRM2_NsCP33_like 305 379 - -
Alju01g1178 467 MobiDBLite consensus disorder prediction 430 452 - -
Alju01g1178 467 Gene3D - 291 391 IPR012677 -
Alju01g1178 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 381 IPR000504 GO:0003723
Alju01g1178 467 SMART rrm1_1 214 286 IPR000504 GO:0003723
Alju01g1178 467 SMART rrm1_1 305 377 IPR000504 GO:0003723
Alju01g1178 467 SUPERFAMILY RNA-binding domain, RBD 298 387 IPR035979 GO:0003676
Alju01g1178 467 PANTHER GEO13361P1-RELATED 196 291 - -
Alju01g1178 467 SUPERFAMILY RNA-binding domain, RBD 208 290 IPR035979 GO:0003676
Alju01g1178 467 Gene3D - 205 290 IPR012677 -
Alju01g1178 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 374 IPR000504 GO:0003723
Alju01g1178 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 276 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1178 Alju-ChrAlju01 9136334 9143606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1178 300 388 C2H2 Transcription Factor Family AT2G19380 35.955 1.05e-12 68.2