Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1176 ATGGGTTCGTCCTCCACTCGCTGCCTCCACGGCTTGAAATTTGGCCACAAAATCTTCTTTGAGGATGTGACTGTCGGAGCTCAGCCCAAATCCACCGCTGGTCGGCGCTCCTCTTCATCTGCGACGGGAATGAAGAAGGGAAAGGGTGGTACTGTTCAAGGAGCTCAACCTCCAAGGTGTCAGGTTGAGGGCTGCAAGGTAGATCTGAATGACGCCAAGGCTTACTATTCCAGGCATAAAGTCTGTGACTTTCACTCTAAATCCCCTAAAGTCATTGTTGCTGGTCTTGAACAGAGGTTTTGCCAACAATGCAGCAGATTTCATCAGCTTAGTGAATTTGATCAAGAAAAACGAAGTTGCCGCAGGCGACTGGCAGGCCATAATGAACGTCGGCGAAAGCCCCAACCTAGCTCCTTGTTGATCTCTCCCTATGCCAGATTTTCACCAGCTGTATTTGATAACCGGGGCAGAGTCGGTGGCTTTCTGATGGAATTTGCTGCAGACCATAAGCCAACTCTAAGGAATGAGTTGCCAGCAGCAGCATCAATGGAGCAAGTTGCAGGCTATCAAAGTTGGGTGGGCAAGATAAACAGCTCTGGTCCCAGAAATCCTGCCGGGGAATGCTTCCCCGGAATTGCAGACACAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGCCTCAGAAACACACCACCAGCTCTTGGAGTGAACAACTTGTGCTTTGGAGGGACATCCATCACACAAGTTGCTGCATCCTCTCATGGTGATCCCATTCCCATCCATCACCTTTCAAATGCCTCAGGGTGTTTCAAAGGCATTGGACGAAATAGTTGTTTGCATGATGAGGTTGTTCCTGATCTTGGTGCGGCCCAGATTTCACTGTCTAATAGTGAACTTCCTGGTGAGCTTGTGATGCCCGAATCCAGCCGGAGGCAATATATTGATCCACAATCTGAAGCCTATGAGTCTTCTCAGCTGGTGCACTGGTCACTTTGA 1002 0.494 MGSSSTRCLHGLKFGHKIFFEDVTVGAQPKSTAGRRSSSSATGMKKGKGGTVQGAQPPRCQVEGCKVDLNDAKAYYSRHKVCDFHSKSPKVIVAGLEQRFCQQCSRFHQLSEFDQEKRSCRRRLAGHNERRRKPQPSSLLISPYARFSPAVFDNRGRVGGFLMEFAADHKPTLRNELPAAASMEQVAGYQSWVGKINSSGPRNPAGECFPGIADTSCALSLLSNQTWGLRNTPPALGVNNLCFGGTSITQVAASSHGDPIPIHHLSNASGCFKGIGRNSCLHDEVVPDLGAAQISLSNSELPGELVMPESSRRQYIDPQSEAYESSQLVHWSL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1176 333 Gene3D - 50 121 IPR036893 GO:0003677|GO:0005634
Alju01g1176 333 Pfam SBP domain 60 133 IPR004333 GO:0003677
Alju01g1176 333 SUPERFAMILY SBT domain 58 139 IPR036893 GO:0003677|GO:0005634
Alju01g1176 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 247 IPR044817 GO:0003677
Alju01g1176 333 MobiDBLite consensus disorder prediction 30 46 - -
Alju01g1176 333 FunFam Squamosa promoter-binding-like protein 14 51 121 - -
Alju01g1176 333 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Alju01g1176 333 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1176 Alju-ChrAlju01 9127554 9129761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1176 12 333 SBP-box Gene Family AT3G57920 37.097 7.87e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju01g1176 SBP 2.2e-32 No_clan