Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1159 ATGGATTCCAATACCTTTCTCAATTATCAACACCAACGTCAGCCCAATTCCGAGTTGCTTCGGTTTCGCTCTGCCCCGACTTCGGTTCTTGCAAATTTCACTCAATCCCTTGGCTCGGATCTCAGTAAGGGAAATAATCCGTGGGAGAATTCTGAATCTGAGAAATTAATCTCTAGATTCGTAAATAACGACGACCTGGATTCGTCTGGTTTCCAGGAATTCGAAGCCAAGCCCCCTAAAGCACAGACCGAGGCAGCACTCAACCATATGAACTCGTATAACAATGGTTTGCCGCCTCACTACCCAAGGCAAAATTCCACGGCAAGTTCTGCAATGGATAGTTCCTATGGACTGGTGGAATCGTTGGGAATGGATCCTCCAACGCAGCCCAAGAGCTTCACTACGAATCTTCTCAGGGAAAGCAGCTCCCCTGCCGGCCTTTTCTCCAACACTTCCTTTCCAAATGGGTATTCCACCGTCAAGGGTGTTGGAAACTATGGTGGGGCAAATGGCAGTAATTATGAAGGGAGTCCATCCATGAGCAGATTGAAGAATCAGCTTGGTTTCTTATCAAGAAGTAGTTCTTCCTTAGGAATGTTGTCACAGATATCTGAGATAGAGGGTGAGAGTATTGAAGCAACCAACCCTGACAACGGGGACTTGGGATCCGTGAATGGTTATGCACCAGGCTTTCCATACAGTTCCTGGAATGACGCGTCCCATCTCTCAGAAAATCTCGGTGGCTTGAAAAGAGAGCCAAGTAACAGTGAAAATTTATTTTCTAATGCTCAGAATGGACCGCTCGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCGGCTGATATGGGTGTCATGGAGAAGTTTCTTCAATTCCCAGATTCTGTTCCTTGTAAGATCAGAGCAAAGCGAGGCTGTGCTACCCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTTCAAGAGCTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGCTGGACTTGGCCGTTGAGTACATTAAAGATCTCCAAAAACAATTCAAGTCTCTCAGTGAAAAAAAGGCAAACTGCAAATGTAAGAGCACGCAGATGGCGGATACAAATCATGTGGTTTGA 1170 0.4564 MDSNTFLNYQHQRQPNSELLRFRSAPTSVLANFTQSLGSDLSKGNNPWENSESEKLISRFVNNDDLDSSGFQEFEAKPPKAQTEAALNHMNSYNNGLPPHYPRQNSTASSAMDSSYGLVESLGMDPPTQPKSFTTNLLRESSSPAGLFSNTSFPNGYSTVKGVGNYGGANGSNYEGSPSMSRLKNQLGFLSRSSSSLGMLSQISEIEGESIEATNPDNGDLGSVNGYAPGFPYSSWNDASHLSENLGGLKREPSNSENLFSNAQNGPLGNRVHMLSHHLSLPKPSADMGVMEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKSLSEKKANCKCKSTQMADTNHVV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1159 389 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Alju01g1159 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Alju01g1159 389 Gene3D - 312 385 IPR036638 GO:0046983
Alju01g1159 389 FunFam Transcription factor bHLH130 family 312 381 - -
Alju01g1159 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 378 IPR036638 GO:0046983
Alju01g1159 389 Coils Coil 358 378 - -
Alju01g1159 389 CDD bHLH_AtbHLH_like 316 369 IPR045239 -
Alju01g1159 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 379 - -
Alju01g1159 389 SMART finulus 317 367 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1159 Alju-ChrAlju01 8990232 8992326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1159 1 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.482 3.15e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g1159 HLH 3.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1159 01 8990232 8992326 Alju01g1159 01 8990232 8992326 ECH