Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1150 ATGGAGACCGATAATGGTGATGCCGAGTCAAAGATGGAAGAGTATGAAGTAATAGAGCAAATTGGCAGAGGAACACTGGGCACCTCCTTCCTCGTTCTCCATAAGTCTGAGAAAAAGAAGTATGCGCTGAAGAAGATTCGCTTGGCTAAGCAAATCGATAAGTCTAAACGTACAGCGCACCAAGAGATGAACCTGATTTCAAAGCTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGATGGAAAAGGAGGACTGCTTATGTATTATAACGGGCTATTGTGAAGGAGGTGACATGGCTGAGATAATAAAGAGAGCCCGGGGATCTTTTTTCTCTGAGGAGAAAATCTGCAAATGGATGACTCAATTATTTCTTGCTGTGGACTATCTGCATTCTAATCGTGTACTCCATGGAGATCTTAAGTGTTCCAACATATTCCTTTCCAAAGGCAATGACATTCGACTTGGTGACTTTGGTCTTGCAAAACTACTGAACACCGAAGGCCTTGCTTCCTCGGGTGTGGGAACCGTAAATCACATGTGTCCTGAGCTCCTTGAAAATATACCTTATGGTTATAAATCTGATATATGGTCTCTTGGTTGTTGCATGTTTGAAATTGCTGCACATCAACCTGCATTTCGCGCTCCAGACAAGGCCGGGCTTATCAACAAGATAAACAGATCGTCCATTTCTCCGCTGCCAATTGTTTATTCGTCAACACTGAAACAAATTATCAAGAGCATGCTGAGGAAGAATCCAGAACATAGACCAACAGCACTGGAATTGTTAAGGCATCCTCATTTACAACCATACATCCTCCGCTGTCGAAATGCATCGGCTATCCTTCTTCCAATAAAATCTGGAAGTAGCCCAAATAGTAGCCCAAATAATAAAACAAAAAGATCTTATAGGTCTGGTGATGGCAAAGACGATAGGGACAAAGAAGTAGAGGGATTAACTAATCGATTGGAAAGCGTTCATCTGTTAGAGGCAAATGGTAATGTACATCCAAGCAGTGTTCCCAAGCGAACAGTTTCATCCAGTGTAGAAGACAACCTTGAGACCAAGATGGATGATCCCACCAGCTACATTGTAGAATCATGTTCTAGTATTAGTGGCTCAAAAGCTGGCTCTACGACATCTGAATCTACTGTTAGTAGTGTGTTCAAGGAAGTGGTCTTTAAAATTAAACCTGCAAGTGAAACAGTTGATAACGAAGTTACATCAGATACATTTCCAGAAGATTCTAAGCATGAAGAACTAGGATTGAATGCTGAACCTTTTCAAAAACCAGAAAGGGTTGACATGGATGCAGTGGCCACAAATGTAAAAGGTATGCTTTCCTATGATGGTTCCACCGAAGCCAAGGGACAGAGGGAAAGTGTCATACCTGAGGACTCCAAGAAACCAATAACGCCCCGTGCAGGAAGCTGTGATGAAGATGGGTCCGTTAAGGAAACATTAAAACCACCAACATCTATGCAGTCGGCTAGGGATAGGGTCGAACAGGACACCGAACCTGGAAGCTGCTTAAAGAGAAGCCATGATACCATTGCATTTCCAGAAGGCCTTCCCTTGGATTGTTTGTCTTCTGAGAGTAATGATAAGCTTGTAGCTAAACCTGGAGGAGGCCAAGCAAGAACACTTGACGCCACTTGCTCCATGTATAAAGAGAATGAAACTGTTAGTGCAGTTGATCAGATACCAAGTGGGCTTTCATTAAGCAAACCTACTGAGATAGGTGGTGGTGAAACCAAGAATGTGCCGGAGAGACCAGGCGAGCACAGAGCTGATGCTTTGGAGTCTCTGCTTGAGTTATGTGCTCAGTTACTTAAGCAGGACAAACTCGATGAACTTGCGCGTGTGCTTGGACCATTTGGCCATGAAGCTGTCTCATCCAGGGAGACTGCAATATGGTTGACAAAGAGCCTCATATCTGCACAAAAAAAATTTAAGACGGAGACCTAG 1971 0.4318 METDNGDAESKMEEYEVIEQIGRGTLGTSFLVLHKSEKKKYALKKIRLAKQIDKSKRTAHQEMNLISKLNNPYIVEYKDAWMEKEDCLCIITGYCEGGDMAEIIKRARGSFFSEEKICKWMTQLFLAVDYLHSNRVLHGDLKCSNIFLSKGNDIRLGDFGLAKLLNTEGLASSGVGTVNHMCPELLENIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDKAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTALELLRHPHLQPYILRCRNASAILLPIKSGSSPNSSPNNKTKRSYRSGDGKDDRDKEVEGLTNRLESVHLLEANGNVHPSSVPKRTVSSSVEDNLETKMDDPTSYIVESCSSISGSKAGSTTSESTVSSVFKEVVFKIKPASETVDNEVTSDTFPEDSKHEELGLNAEPFQKPERVDMDAVATNVKGMLSYDGSTEAKGQRESVIPEDSKKPITPRAGSCDEDGSVKETLKPPTSMQSARDRVEQDTEPGSCLKRSHDTIAFPEGLPLDCLSSESNDKLVAKPGGGQARTLDATCSMYKENETVSAVDQIPSGLSLSKPTEIGGGETKNVPERPGEHRADALESLLELCAQLLKQDKLDELARVLGPFGHEAVSSRETAIWLTKSLISAQKKFKTET 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1150 656 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g1150 656 MobiDBLite consensus disorder prediction 450 514 - -
Alju01g1150 656 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 514 - -
Alju01g1150 656 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Alju01g1150 656 MobiDBLite consensus disorder prediction 287 318 - -
Alju01g1150 656 MobiDBLite consensus disorder prediction 570 593 - -
Alju01g1150 656 SUPERFAMILY Protein kinase-like (PK-like) 12 301 IPR011009 -
Alju01g1150 656 Gene3D Transferase(Phosphotransferase) domain 1 95 281 - -
Alju01g1150 656 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g1150 656 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g1150 656 MobiDBLite consensus disorder prediction 460 487 - -
Alju01g1150 656 CDD STKc_Nek 15 269 - -
Alju01g1150 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Alju01g1150 656 MobiDBLite consensus disorder prediction 287 302 - -
Alju01g1150 656 MobiDBLite consensus disorder prediction 303 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1150 Alju-ChrAlju01 8888947 8893957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1150 21 270 MAP Kinase Kinase Kinase AT1G53570 32.549 5.29e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Alju01g1150 Pkinase 8.8e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1150 01 8888947 8893957 Alju03g2287 03 49760652 49765233 CCT
Alju01g1150 01 8888947 8893957 Alju01g1150 01 8888947 8893957 ECH