Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1146 ATGGCTGACCCTTACTCTCATCTTTTCCCTTCTCCTCCTTTCTTCCACCAATTCAACTCTAACCCTTCTTCTCACCACCACCATCCTTATGCTCTCCACAACTTCATCAACCATCCCACCGCTTCCTCCTCCGGCAGCTTTTTCCACCACCACCACCATGCCGTAGCTTCTTATTCTTCTATACCTTCATCACCGCCGTCTCCTCCTCTCAGAGAAGCCCTTCCTCTTCTGAGCCTCAGCCCCTCCACCAGGCAAGAGCATCAGGATTCTCATCATAATCAGGACTTGGATGATGTCAAGGTCGACGGTGGCGGCGCGATCATCCTCCACGGTGCTAAACCCAAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACCACCGTCACTGTTGCACTCCACATAGGGCTGCCCAGCCCCAGTGCCGCTGAGATGGCTTCTGTCCTCTCCTCTTGCAACCATAAAGAAGGAGGAGATGGCGGCGGCGGTGGAGGAGGAGGCGGCGGAGACGGAGACGGAGACGGAGATCATGAGGATTATTGTTCTGGCTCCAGCGGGTTCATGCTGCACAATAAGCTCAACAAGGGACAGTACTGGATCCCTACTCCTTCACAGATTCTCATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGAGAGGAACACAACCAACGGGAATGCTAAGGCTTCCATGTTATTGTTGTGCACCAGGTTGCAGAAACAACATAGACCATCCAAGAGCGAAGCCACTGAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCACGGGATCAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCACGAGAAAAATTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTTAAGCACAAGAGGTCTCTTAAGGATCATATCAAAGCCTTTGGAGTTGGCCATGCTGCTTATGGGATCGATGGCTTTGAAGAAGAAGATGACCCTGCCTCCGAAGTCGAGCAAGATAACGAGTCCACTCACTAA 1131 0.5111 MADPYSHLFPSPPFFHQFNSNPSSHHHHPYALHNFINHPTASSSGSFFHHHHHAVASYSSIPSSPPSPPLREALPLLSLSPSTRQEHQDSHHNQDLDDVKVDGGGAIILHGAKPKEEEEEEEEEEEEETTVTVALHIGLPSPSAAEMASVLSSCNHKEGGDGGGGGGGGGGDGDGDGDHEDYCSGSSGFMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEEDDPASEVEQDNESTH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1146 376 MobiDBLite consensus disorder prediction 147 181 - -
Alju01g1146 376 MobiDBLite consensus disorder prediction 85 99 - -
Alju01g1146 376 Gene3D Classic Zinc Finger 277 351 - -
Alju01g1146 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Alju01g1146 376 MobiDBLite consensus disorder prediction 110 129 - -
Alju01g1146 376 Gene3D Classic Zinc Finger 214 237 - -
Alju01g1146 376 MobiDBLite consensus disorder prediction 81 101 - -
Alju01g1146 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 319 IPR013087 -
Alju01g1146 376 SUPERFAMILY beta-beta-alpha zinc fingers 281 319 IPR036236 -
Alju01g1146 376 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Alju01g1146 376 FunFam Zinc finger protein WIP2 268 350 - -
Alju01g1146 376 PANTHER ZINC FINGER PROTEIN WIP2 43 373 IPR043584 GO:0003700|GO:0010468
Alju01g1146 376 FunFam zinc finger protein WIP2-like 214 237 - -
Alju01g1146 376 SMART c2h2final6 299 319 IPR013087 -
Alju01g1146 376 SMART c2h2final6 215 237 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1146 Alju-ChrAlju01 8869035 8871312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1146 1 373 C2H2 Transcription Factor Family AT3G57670 62.245 5.47e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1146 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1146 01 8869035 8871312 Alju03g2286 03 49744788 49747033 CCT
Alju01g1146 01 8869035 8871312 Alju01g1146 01 8869035 8871312 ECH