Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1139 ATGGATTCTTGCAGAAAGTCTCCATTAAAGCCATGGAAGAAAGGGCCAAGCAGGGGGAAAGGTGGACCTCAGAATGCAATGTGCGAGTACCGGGGTGTTCGCCAGAGAACGTGGGGAAAATGGGTTGCTGAGATCAGAGAGCCGAAGAAGAGAACTAGGCTGTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCCGCAATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGTCCAGATGCTTACCTTAATCTTCCCCATCTTCAACCCATCTCCAGCTCCACCATCAAATCTCAAAAGTTCAAATGGTTTCCTTCCAAGAATTTCATTTCGATGTTCCCTTCTTGTGGATTGCTCAACGTTAATGCTCAGCCTAGTGTTCATGTAATCCACCAGAAGCTGCAACAACTCAAGCAGAATGAGGTTCCCACCAGCTCATCCTGTGATCCAAAGGCTGAAGTTCAGAATATAGGAAGCAAGCGTAATGCAGACAATCCTCCAAATGAAAAAGAAGCTAAAACATCATCAGAAAGTATGCTTAGTGTTATTCAGGACAAACCCCAGATTGACCTCCATGAGTTTCTTCAACAGATGGGGGTACTAAAGGATGAAAAACAGTCAGGAAGTTCCACAAAGTCTGAAGCTCTATCAAATGATTTCAGTGATAATTTTGGAGAGTGTTCTGACAAGAGTGTTAACTGGGAGGAATTAATGGAGATGCATGCAGTTGCAGATAATCAGGGATCAGAGGCAGCTCAATTTCAAGCATATGACATAAATGAAGAGCTTACTTTCACCACTTCGATTTGGAACTTCTAA 819 0.4383 MDSCRKSPLKPWKKGPSRGKGGPQNAMCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPISSSTIKSQKFKWFPSKNFISMFPSCGLLNVNAQPSVHVIHQKLQQLKQNEVPTSSSCDPKAEVQNIGSKRNADNPPNEKEAKTSSESMLSVIQDKPQIDLHEFLQQMGVLKDEKQSGSSTKSEALSNDFSDNFGECSDKSVNWEELMEMHAVADNQGSEAAQFQAYDINEELTFTTSIWNF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1139 272 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Alju01g1139 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 238 - -
Alju01g1139 272 MobiDBLite consensus disorder prediction 1 26 - -
Alju01g1139 272 MobiDBLite consensus disorder prediction 138 179 - -
Alju01g1139 272 MobiDBLite consensus disorder prediction 138 163 - -
Alju01g1139 272 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Alju01g1139 272 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Alju01g1139 272 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Alju01g1139 272 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Alju01g1139 272 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Alju01g1139 272 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Alju01g1139 272 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Alju01g1139 272 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1139 Alju-ChrAlju01 8799839 8800657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1139 5 272 AP2-EREBP Transcription Factor Family AT3G57600 51.273 4.43e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g1139 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1139 01 8799839 8800657 Alju03g2280 03 49690299 49691150 CCT
Alju01g1139 01 8799839 8800657 Alju01g1139 01 8799839 8800657 ECH