LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g1134	ATGAAAAGGGCAAATCTGACGACTTTCCTTGACTCTGGATTTTTCCTTCGTTTTCTCCCTAATTTGAGAGCCGCTGAATATCCTGCAAATAAGAGCATCTGCAAAATGAATCACTTAACTATTGAGACTGATGATGATTTTGCAAGCTTACTTGAGCTTGCAGCTAATAATGATGTTGAGGGTTTTGAACGACTGATTGAGCGTGATCCATCCTGTGTTGATGAGGTTGGAGTATGGTATGGTCGCAGAAAGGGTTCAAAACTAATGGTCAATGAGCAGAGAACTCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGGTGTCATGAAGCTAATTCTATCACGGTCCAATGCTAACGTAAATCGTCCTTGTGGCCTTGACAAGAGCACTGCACTTCATTGCGCTGCATCTGGTGGAGCTGCTACTGCGGTTGATGTTGTAAAACTGCTCTTATCAGCAGGTGCTGATCCAAGGTCCGTGAATGCCAATGGTCACCGTCCAGTTGCCGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATGGCAGGAATTAATCTTAGGGTTAACACAACCACATCAAGAGCTGATTCTCCTCCTTTATCAGCTTCACCAGAGAATGAGTCTCCATCTTCTGCACCAGATGTCCACTTGAAGTCAAAGTCAAATGACGCTCCTGTTTCTCATGCATCAGAGAAGAAAGAATATCCAGTTGACCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCTGGAGAAAATGCCCGAAGAAGGGACCCAAGGAAGTTCCACTATAGCTGTGTTCCTTGTCCTGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCTGCTCAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGCTCTAGAAGAGTTTGTTTCTTTGCCCACACTGCTGAGGAGCTTCGGCCTTTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAAGCACATCTGCCATGGATTTTGCTGCAGCTATGAGCCTGTTGCCTGGCTCCCCTTCCTCTATGTCTGTCATCTCCCCATCACCATTCACTCCGCCTATGTCTCCATCTGCCAATGGCCTGTCACTCCCTTCAGCTGCTTGGTCGCAAGCCAATGTCCCATCTTTGCATTTGCTAGGAAGTAATCTTCATTGCTGTCATTTGAGATTGTCGCATAATGCTAGAGATATTCCTGTGGAAGACTTGGATTTGTTGCCAGAATATGAAGTTCAGCAACAGCAGCTCCTTAATGAGTTTTCTTGTCTTCCTCAACAACCAATGAATTCTAATAGCATGAATCAGTCAGTTCGTATGAAGACCTTGACCCATTCAAACCTTGATGATCTATTTTCTGCTGAGAACTCTTCCCCTCGATTTGCTGATCCAGCAATGGCCTCAATTGTTTACTCCCCTACGCACAAATCTGCTGTTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAAATTTCCTTCAAAGAATGTTGATCATTCTTTATTGCAGACTTCTTTTGCCGTTCAGTTACCAGGAAGGATGTCACCACGCAAAGTGGAACCTATTTCACCGATGAGCTCCAGAATTTCTATGCTAGCTCAACGTGAGAAGATGCAACAATTCCGTAGCCTTAGCTCTCGGGAACTTGGTTCCAGCGCTGCGGCTGCTGTTACTGGTTCCTCAGTCAATTCTTGGTCCCAATGGGGTTCCCCCAACGGTAAGTTGGATTGGGCTATCGGCAGCGATGATTTGGATAAATTCCATAGATCGTCTTCATTTGAGCTTCGGAACAATGGTGAGGAGCCTGACTTATCATGGGTGCAGTCTCTAGTCAAAGAATCTCCGGCTGAGATTAAAGAGCCGTCCACTAGTGTCCCAGGCATGGCAATGGCGGGAACCTCTGGTGGGGGATCAAATATTAGCGGCCAAATCGAACCTGTTGATCATGCTTTATTGGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA	2205	0.454	MKRANLTTFLDSGFFLRFLPNLRAAEYPANKSICKMNHLTIETDDDFASLLELAANNDVEGFERLIERDPSCVDEVGVWYGRRKGSKLMVNEQRTPLMVAATYGSIGVMKLILSRSNANVNRPCGLDKSTALHCAASGGAATAVDVVKLLLSAGADPRSVNANGHRPVAVIVVPPKLDHVKNSLEELLQTDDSMAGINLRVNTTTSRADSPPLSASPENESPSSAPDVHLKSKSNDAPVSHASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMSLLPGSPSSMSVISPSPFTPPMSPSANGLSLPSAAWSQANVPSLHLLGSNLHCCHLRLSHNARDIPVEDLDLLPEYEVQQQQLLNEFSCLPQQPMNSNSMNQSVRMKTLTHSNLDDLFSAENSSPRFADPAMASIVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNVDHSLLQTSFAVQLPGRMSPRKVEPISPMSSRISMLAQREKMQQFRSLSSRELGSSAAAAVTGSSVNSWSQWGSPNGKLDWAIGSDDLDKFHRSSSFELRNNGEEPDLSWVQSLVKESPAEIKEPSTSVPGMAMAGTSGGGSNISGQIEPVDHALLGAWLEQMQLDHLVAQQN	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g1134	734	Gene3D	-	306	369	-	-
	Alju01g1134	734	MobiDBLite	consensus disorder prediction	238	252	-	-
	Alju01g1134	734	ProSiteProfiles	Ankyrin repeat region circular profile.	127	156	-	-
	Alju01g1134	734	Pfam	Ankyrin repeats (3 copies)	54	158	IPR002110	GO:0005515
	Alju01g1134	734	SMART	c3hfinal6	341	364	IPR000571	GO:0046872
	Alju01g1134	734	SMART	c3hfinal6	306	332	IPR000571	GO:0046872
	Alju01g1134	734	PANTHER	UNKEMPT FAMILY MEMBER	52	679	IPR045234	-
	Alju01g1134	734	SUPERFAMILY	Ankyrin repeat	46	171	IPR036770	-
	Alju01g1134	734	MobiDBLite	consensus disorder prediction	680	707	-	-
	Alju01g1134	734	SMART	ANK_2a	92	122	IPR002110	GO:0005515
	Alju01g1134	734	SMART	ANK_2a	127	159	IPR002110	GO:0005515
	Alju01g1134	734	SMART	ANK_2a	45	74	IPR002110	GO:0005515
	Alju01g1134	734	ProSiteProfiles	Ankyrin repeat profile.	127	162	IPR002110	GO:0005515
	Alju01g1134	734	MobiDBLite	consensus disorder prediction	204	230	-	-
	Alju01g1134	734	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	311	331	IPR000571	GO:0046872
	Alju01g1134	734	ProSiteProfiles	Zinc finger C3H1-type profile.	311	333	IPR000571	GO:0046872
	Alju01g1134	734	FunFam	Zinc finger CCCH domain-containing protein 66	264	332	-	-
	Alju01g1134	734	MobiDBLite	consensus disorder prediction	204	253	-	-
	Alju01g1134	734	Gene3D	-	25	176	IPR036770	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g1134	Alju-ChrAlju01	8765926	8769729	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g1134	30	727	C2H2 Transcription Factor Family	AT5G12850	51.541	0.0	650

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Alju01g1134		Ank_2	1.2e-08	CL0465