Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1129 ATGCAACAAAAGCTGGACCACACTGCAAAGCGTTCTAAATCAGATATATGCAACAATAAACTATATAGCACCTGCTCTCAAGCTTGGTGGCATGACGCAAGGCACGATGCCTTGTCTAAAGAGATGGTAGGGGAAGTCAAAATGAATTATTTTGTGCCTCAAAACTTGGATGCTAGTTTTGTGAACATGACCAGTAATTCACAAGCTGTGACTCTTGTGGCTGAAGGGAGGGAAGCTAGCAAAGAGAAAGGTGGAGAAAAGTATGAAGAACATCAACAAAAACAATTTTCTGTCCGTACTATGCCTTCAACAGTAAATGAATTTCTTGTGCCACCTAGACAGTCAAAGGTTGCTGGCCATTCGACGGCATGTGCATCTTACGCATATCCAGATCCACATTATGGGGGAGCAATTCCTACTTATGGACCTCAGCCTTTGATACATCCTCCTAGTCTTGGAGTGCATTCTTCTAGAATGGTGTTACCACTGCAAATGGAAGAAGAACCTGTGTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCCCGTGCCAAGGCTGAGCTTGAAAAGAAGGTTATAAAAGTGAGGAAGCCCTATCTGCACGAGTCTCGGCATTTACATGCCTTGAGAAGAGCAAGAGGGTGTGGAGGCCGTTTTCTGACAACAAAGAAGGTTGATGGTACTGCTGCAAACACAGCAAACAAGAACCAGGATACTGTTAGTTCTGACCACAAAGGCATGTCTCCCAATTTGCCTGCCATTGCTGATTCAAATTCTGGTTCCCGACAAATCTTGAGTTCCCACCAATCAGACATGCACTCCAGTTCTAATGGCAACAACAATTATTACTCACAAGTTCAGGGATTGGATCTGTCTGGTTATCGACCTCTCTCGAACGGGGCTCACAGGGCCCTCACGATCAAATAA 939 0.4441 MQQKLDHTAKRSKSDICNNKLYSTCSQAWWHDARHDALSKEMVGEVKMNYFVPQNLDASFVNMTSNSQAVTLVAEGREASKEKGGEKYEEHQQKQFSVRTMPSTVNEFLVPPRQSKVAGHSTACASYAYPDPHYGGAIPTYGPQPLIHPPSLGVHSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGCGGRFLTTKKVDGTAANTANKNQDTVSSDHKGMSPNLPAIADSNSGSRQILSSHQSDMHSSSNGNNNYYSQVQGLDLSGYRPLSNGAHRALTIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1129 312 Gene3D - 166 227 - -
Alju01g1129 312 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 284 IPR001289 GO:0003700|GO:0006355
Alju01g1129 312 MobiDBLite consensus disorder prediction 234 287 - -
Alju01g1129 312 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Alju01g1129 312 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Alju01g1129 312 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Alju01g1129 312 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Alju01g1129 312 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Alju01g1129 312 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1129 Alju-ChrAlju01 8730097 8733459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1129 96 230 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.556 2.09e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju01g1129 CBFB_NFYA 5.4e-26 No_clan