Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1114 ATGTTTGAACTGTTGCGTTGTCTTCTCCGGCCTCTTCTTCGAGGTTTAAATTGCTCAGCTGATTTTGATCCTCGAATGGGAACTCCCGAATTCCCTGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAGTTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAAGTATATTGTTTGGAGCACAGAGGTTATGTTAAACATCAGTGTCAGAAAGCGGATAGACTCGATGTCACTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTTCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTAAACACTGAATGTGACCCATCAAATTATGAGAAAGCCATGAAGAAGAAAAAATGCCCTGCCTCTGGATGCAGAGAGGTCTTGGTGTTCTCAAACACAATCAAATGCAGGGATTGCTTGGTAGATCATTGTCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCAGGACCCAAAAGTTTGGAAACAAGCTTTTCATTTATGAAGCTCTTAAGCAGAAGTAGAAAAGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCTCATCAAAATGGGCTTCGGGCTTTCGCAACGTGGCATCAAATCTTCGTGCTTCAGCTGAAGCCAGCATGTCAAAATTGGGCAATGAAATTAACCAAGCTTGGCATACAGCAAAGGATGGGACGGGACAGAGCAGTGGTAGGGGTAATGAAAATGGGCAAGTGGAGATGGAGCAATGTCCTCAGTGTAATGCAAAGTTTTTGTCTGTTACTTCTTTGGTGGATCATGTACAGAAAGTTCATGAAAGGAGCAGCAACCCATCCCGGGTGGCGAAGGTGACCATTGATGTCTGTCCCAAATGCAGCAGAGGATTTCGAGATCCAGTGGCTCTTGTGGAGCATGTTGACAGAGATCACGGTGTGATCTGTCTTCTTCGTTACAGACTTCCAGCGTGCAATTTGAACATGGCAAGCGGCAAGTATATCATTCCTGCTCTAATAGCATCATTTGGAGTTGCATGGATCTGTGACACATTTATTTCTGACTCAAAGATGTTTGGAGGCACTACCCCAAAAACAGTTTCAAGTAAGGAGTGGTTTGAGGAGACTGACAAAAAATTTCAGGCATGGCCTCGTACTGCTGGTCCCCCGGTGGTTATGAATCCCATAAATCGCCAAAATTTCATCGTCAAGTCCCGCTCTGATTCTTGA 1233 0.442 MFELLRCLLRPLLRGLNCSADFDPRMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRGYVKHQCQKADRLDVTVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYEKAMKKKKCPASGCREVLVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLETSFSFMKLLSRSRKEESKPNPSPPTSSSKWASGFRNVASNLRASAEASMSKLGNEINQAWHTAKDGTGQSSGRGNENGQVEMEQCPQCNAKFLSVTSLVDHVQKVHERSSNPSRVAKVTIDVCPKCSRGFRDPVALVEHVDRDHGVICLLRYRLPACNLNMASGKYIIPALIASFGVAWICDTFISDSKMFGGTTPKTVSSKEWFEETDKKFQAWPRTAGPPVVMNPINRQNFIVKSRSDS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1114 410 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 30 278 - -
Alju01g1114 410 MobiDBLite consensus disorder prediction 230 249 - -
Alju01g1114 410 Gene3D Classic Zinc Finger 218 314 - -
Alju01g1114 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 280 IPR013087 -
Alju01g1114 410 ProSiteProfiles Zinc finger AN1-type profile. 32 80 IPR000058 GO:0008270
Alju01g1114 410 SUPERFAMILY AN1-like Zinc finger 18 75 IPR035896 -
Alju01g1114 410 Gene3D - 26 83 IPR035896 -
Alju01g1114 410 SMART c2h2final6 290 313 IPR013087 -
Alju01g1114 410 SMART c2h2final6 252 275 IPR013087 -
Alju01g1114 410 ProSitePatterns Zinc finger C2H2 type domain signature. 254 275 IPR013087 -
Alju01g1114 410 Gene3D - 105 177 IPR035896 -
Alju01g1114 410 Pfam AN1-like Zinc finger 126 165 IPR000058 GO:0008270
Alju01g1114 410 Pfam AN1-like Zinc finger 38 76 IPR000058 GO:0008270
Alju01g1114 410 SMART AN1_Zf_4 126 167 IPR000058 GO:0008270
Alju01g1114 410 SMART AN1_Zf_4 38 77 IPR000058 GO:0008270
Alju01g1114 410 MobiDBLite consensus disorder prediction 188 202 - -
Alju01g1114 410 Pfam Protein of unknown function (DUF1138) 333 405 IPR009515 -
Alju01g1114 410 ProSiteProfiles Zinc finger AN1-type profile. 120 170 IPR000058 GO:0008270
Alju01g1114 410 MobiDBLite consensus disorder prediction 179 202 - -
Alju01g1114 410 ProSitePatterns Zinc finger C2H2 type domain signature. 292 313 IPR013087 -
Alju01g1114 410 SUPERFAMILY AN1-like Zinc finger 82 167 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1114 Alju-ChrAlju01 8585838 8592064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1114 26 313 C2H2 Transcription Factor Family AT2G41835 63.699 1.17e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g1114 DUF1138 9.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1114 01 8585838 8592064 Alju01g1114 01 8585838 8592064 ECH