Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1093 ATGGGGAGAGGGAAAATTGAAATTAAGAAGATAGAGAATTTGAATAACAGGCAGGTCACCTTCTCAAAGCGGCGTAATGGGCTGCTCAAGAAGGCCAAGGAGTTGTCTGTTCTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCCAGCACCGGCAAGCTTTATGAGTTCTCTAACACAAGCATGGAGCACACTCTTTCAAGGTACACCAAAGGCGTGGAATTGGACTATACAGAGCAACCTTGTGCTGTGCCACCAGCTGAGGAGACTGGGCCTGATACAGACCTTCTAAAGGATGAAGTGAGAAAGCTTCGTTTAGCATCCTTAAGAATGATGGGAAAGGAGCTGGACGGGTTGAAATTTAAAGAGCTGCAGAACTTAGAAAATCAACTGAGTGAAGGGATATTATCTGTTAAAGAAAAGAAGGAACAAATACTTCTTGATCAACTTAGAAGGTCCAGATTGCAGGAGCAACAAGCCATGCTGGAGAATGAAGCTCTGCGCAAACAAATAGAGGAGATTCAGAATAAAACAAACACAAGACACTTTGTTTATTTGAATAGCTTAGAGAGCAGATTCTCCAGCCCCATTTTGCATTGTGCCTCCCATGAAAGACAAGACCTTTCTGACACTTCCTTGCAGTTAGGGTTGTCGACAGAATTTGGTCGCAAGAGGAAATCACTGAAAGCAGAACCCTGCAACGCCTCTGCATCGCAAAACACTCCTTAG 729 0.4403 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDYTEQPCAVPPAEETGPDTDLLKDEVRKLRLASLRMMGKELDGLKFKELQNLENQLSEGILSVKEKKEQILLDQLRRSRLQEQQAMLENEALRKQIEEIQNKTNTRHFVYLNSLESRFSSPILHCASHERQDLSDTSLQLGLSTEFGRKRKSLKAEPCNASASQNTP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1093 242 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
Alju01g1093 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 Coils Coil 124 144 - -
Alju01g1093 242 FunFam MADS-box transcription factor MADS-MC 13 81 - -
Alju01g1093 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Alju01g1093 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g1093 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 Coils Coil 150 177 - -
Alju01g1093 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju01g1093 242 Pfam K-box region 95 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g1093 242 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Alju01g1093 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Alju01g1093 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1093 Alju-ChrAlju01 8372744 8374944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1093 1 241 MADS-box Gene Family AT5G13790 47.410 1.23e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju01g1093 K-box 2.6e-14 No_clan