Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1085 ATGGATCACAGAAGGCCATCCAATGACTTGCTCTCGTACTCTAGTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAAGAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAATTCACAGCAATGGGAGTATGCGTGGAAGGGAGGTAAAATTGCTGAAGAAGAGGAAGTGGTATCAAAACAGCGACGACGAGGACAAGGGTAATTTTTCTGGAACGCACATGACAGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGTGTTAGCGCTCAACTTAAAAGCAATATAGGTTCAAAAGCGTTGAAGTTAGTGAATGAGCACCGAGGAGGAATACATGCTCTGGAGACTACATCTGAGTGGCAGAATGATATTAATCCTCAGAAACCTGGAAACTACCGTGATGCAGAATTCAGACAGCAATATGGATCTGATAGAACCATCTACGAACCAGCTTCTTTAGGTATTGGAGATGGCGTTACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTCTCAGATATCCGAGTTGAGGAATTTTACTTAAAAGGCACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCGAGTAGGCATGGGGGAAACCTTACCTCAATATGATTCTCTTCAGGCACGATTGAAGGCCATATCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAACTATCTGATGTTGGTCTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAGATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGGAGAGACATACCAAAGCATCATAGGTTTTTTTTTGGTTTCCATCGAAAGCAACTTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCTCTTAAATTCATGAGGAGTGCACCCATTCGCACCCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAGGAAAGAGGAGAAAGAAGCTGCAGAAGCTCTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCGAACCTACTGTCTTCTGATGCTTTACCTACAGTGGATGAAAAAGCAGATGATCAAGATGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGAGGAGGAAGATCCTGAAGAGACTGAGCTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCTGTATCTAAGCAGAGAAAGTTGACAAGTGCTTTTGATAGTGAATGCTTGAGGCTGCGTCAGGCTGGAGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGGACACCAGAAATGTTTAGAGGCTCTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCCTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCATCAGTATTGAACAATTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAGGGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGTTTTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGCACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCATTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTCTAAAGCCATTCATGCTGCGCCGAGTTAAAAAAGATGTAATATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAGATATCTCTTGCTGAGTTGTTTGATCGTAATCGTGGGCAGTTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATGCCCTTCTGCCTCCTCCGTTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAACCCAATATCATACAAGGTGCCAAAACTTGTCTTTCAAGAAATCATGGAAGGTTCTAAATTGCTCGATTTGACAATTGCTCATGGTGTGAGCAGAGAATTTTTTCAAAGACATTTTAATATTTATAGCCCGGAGAACGTTTTTCATTCTATCTTCTCTGAAGGGAATAAATCAAATGCATCATTTATTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGAATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGACGGGAACATAAATTTATCAATGAAGTTGTGGACTTCACAACGGAGACTATAGATAATGATCCTGAATACGGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTTACACGATTGTTATTGGTGCCAACAAAATCTGAGACTGAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGCTATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTTTATCCGATGCAAGGCTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCTTGGGTTAAAAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCATCTCCCCCTATGCAAAATTTTGACCCAGCTAAATTGCTCACTGACTCTGGGAAGCTTCAAACTCTTGACATATTACTAAAACGCTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCGTCGTCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTAATCTTTTACGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGGTTGGGTCAAACAAAAGATGTCACTGTTTATAGGCTTATATGTAAAGAAACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTGGTGGTTCTACTGATGATGTTATAGCTCCTGAGGATGTTGTGTCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGTAAAGGATAAGCAGAAGAGGAAACAGACTGTGAAGGGTATACGGGTTAATGAAGATGGTGATGCGTCCCTGGAAGATCTAACAAACTCTGGAGCACAGGGCCCAGATAATGATACTTCTCTTGACCCAGAGGGATCAAAGGCAAGTAATAAAAAGAGAAAAGCTGCCTCTGACAAGCAAACCGCATCAAGGGCAAGGAATTTTCAAAAGATGAATGAGTTAAATAGTAGTTCAATACTGGAGTACGAGTTGTATGATGCTACTCAAAATACTGATCCAGTCGTTCAGAAACCCAAAAGACTAAAGAAGGCAAAGAAAGTTGGGAACGAGTTTGACGACTCTCCTGCCGGCACAGTGAATATATTCCCAGAGCAGACCCGATAG 4557 0.415 MDHRRPSNDLLSYSSLFNLESLMNFQLPQEDDDFDYYGNSSQDESRDSQGGAIAIHSNGSMRGREVKLLKKRKWYQNSDDEDKGNFSGTHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVSAQLKSNIGSKALKLVNEHRGGIHALETTSEWQNDINPQKPGNYRDAEFRQQYGSDRTIYEPASLGIGDGVTYKIPPTYDKLAAMLNLPSFSDIRVEEFYLKGTLDLGSLAAMMASDKRGGTRNRVGMGETLPQYDSLQARLKAISASNSPHQFSLKLSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEEMERIGKVWVNIVRRDIPKHHRFFFGFHRKQLVDAKRFSENCQREVRMKVSRSLKFMRSAPIRTRKLARDVLLFWKRADKEMAELRRKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDQDAELGSSDAGPSEEEDPEETELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKGINPKDLYRREAKFHILITSYQLLVSDEKFFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDRNRGQFNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNALLPPPFGELEDVYYSGGHNPISYKVPKLVFQEIMEGSKLLDLTIAHGVSREFFQRHFNIYSPENVFHSIFSEGNKSNASFIKSGTFGFTHLMNLSPQEVMFSATGSFMEQVLFSMVRREHKFINEVVDFTTETIDNDPEYGYLERGKVRAVTRLLLVPTKSETEIFQRRFATGPSYAPFEALVVPYQDRILSDARLIHSAYTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSELPVAQPALQLTYKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDVIAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDLTNSGAQGPDNDTSLDPEGSKASNKKRKAASDKQTASRARNFQKMNELNSSSILEYELYDATQNTDPVVQKPKRLKKAKKVGNEFDDSPAGTVNIFPEQTR 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1085 1518 PANTHER HELICASE SRCAP-RELATED 87 529 - -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 41 55 - -
Alju01g1085 1518 Coils Coil 426 465 - -
Alju01g1085 1518 Gene3D - 827 898 IPR027417 -
Alju01g1085 1518 Gene3D - 585 826 IPR038718 -
Alju01g1085 1518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1213 1396 IPR001650 -
Alju01g1085 1518 ProSiteProfiles DBINO domain profile. 354 479 IPR020838 GO:0003677
Alju01g1085 1518 MobiDBLite consensus disorder prediction 1396 1461 - -
Alju01g1085 1518 Pfam Helicase conserved C-terminal domain 1213 1322 IPR001650 -
Alju01g1085 1518 Pfam DNA-binding domain 349 478 IPR020838 GO:0003677
Alju01g1085 1518 MobiDBLite consensus disorder prediction 33 59 - -
Alju01g1085 1518 SMART helicmild6 1239 1322 IPR001650 -
Alju01g1085 1518 Gene3D - 1180 1424 IPR027417 -
Alju01g1085 1518 FunFam Putative DNA helicase INO80 561 839 - -
Alju01g1085 1518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 601 772 IPR014001 -
Alju01g1085 1518 CDD SF2_C_SNF 1201 1333 - -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 490 518 - -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 1396 1413 - -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 1436 1451 - -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 1414 1435 - -
Alju01g1085 1518 FunFam DNA helicase INO80-like protein 1181 1432 - -
Alju01g1085 1518 SMART ultradead3 585 780 IPR014001 -
Alju01g1085 1518 MobiDBLite consensus disorder prediction 1496 1518 - -
Alju01g1085 1518 Pfam SNF2-related domain 604 891 IPR000330 GO:0005524|GO:0140658
Alju01g1085 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 817 IPR027417 -
Alju01g1085 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1085 Alju-ChrAlju01 8276803 8287601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g1085 610 891 RAD5 or RAD16-like Gene Family AT5G43530 29.429 3.18e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju01g1085 SNF2_N 1.8e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1085 01 8276803 8287601 Alju01g1085 01 8276803 8287601 ECH