Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1034 ATGTCTTCGGATGAGTCTCTAAGATCTCTATCTATGGACTATCTCAACCTCCTCATCAACGGTCAAGCCTTCAGTGATGTCACTTTCAGCGTGGAGGGTCGCCTGGTTCCCGCCCACCGCTGCATCCTGGCGGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGCGGACCGGACACGCCATCCGGCCTGGACCTCATGGGCTCGGGCTCGCGGGTCAACTCGGCCACATCTCCGTCGTCCAGACCCGGGGTCATTTCGGTGAACTCGGTGGGTTATGAAGTGTTCCTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGCGAAAGGGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGATACTCTCGCTGCCGCTAGATCCTTTGGCGTTGAGGAACTCGCATTGCTCACTCAGAAACAATTAGCCAGCATGGTAGAGAAGGCCTCCATTGAAGATGTAATGAAAGTGCTTTTAGCTTCAAGAAAGCAAGACATGCACCAACTTTGGACTACTTGTTCGCACCTCGTTGCCAAGTCTGGTCTCCCTCCTGAAGTCCTCGCCAAACACCTTCCCATCGATGTTGTTGCTAAAATCGAAGAGCTTCGACTCAAAACGTCCCTCGTCCGTCGCTCCCTGATCCCACACCACCACTCCCACCACCACCACGACCATATCACCGCCACAGCAGATCTCGAGGACCAGAAAATCCGCCGAATGAGAAGAGCACTTGACTCCTCGGATGTTGAACTCGTGAAGCTCATGGTTATGGGAGAAGGTTTAAATCTAGACGAAGCATTGGCCTTACACTACGCCGTAGAGAATTGCAGCCGTGAAGTCGTTAAGGCCTTGCTTGAGCTCGGTGCAGCCGATGTCAACTACCCCGCCGGACCCGCCGGCAAGACCCCGCTCCACCTTGCCGCCGAGATGGTGTCACCGGACATGGTGGCCGTCCTCCTTGACCACCACGCTGACCCGAACGTCCGGACCGTCGACGGGATAACCCCTCTTGACATCCTGAGAACCCTAACTTCTGATTTTCTGTTCAAAGGAGCCGTCCCTGGGCTTGCTCATGTTGAACCCAACAAACTAAGGTTGTGTTTGGAGCTGGTTCAATCTGCGGCTCTTGTACTCTCACGTGAGGAAGGCAATGCAAATCCTCCTTCTTCAACTGCCATTTATCCTCCAATGAACGAAGACCATAACAGCAGTAGTAGCAATAGCAATATTGCGAACCTTAATCTGGACTCAAGGCTGGTTTACCTGAATCTGGGTGCCGCGTCGACGTCAGCTGCGGCACAAATGGGTTCGAGATTGGAGGGCGACGAAGATAGCAGCCACAGTAGCCATCAGAACCGTCATGGCTCTCAAGGTGGATCATGTGACCAAACAATGTACCACCATTCTCATCATGACTATAATTAA 1479 0.5335 MSSDESLRSLSMDYLNLLINGQAFSDVTFSVEGRLVPAHRCILAARSLFFRKFFCGPDTPSGLDLMGSGSRVNSATSPSSRPGVISVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEELALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLVRRSLIPHHHSHHHHDHITATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGITPLDILRTLTSDFLFKGAVPGLAHVEPNKLRLCLELVQSAALVLSREEGNANPPSSTAIYPPMNEDHNSSSSNSNIANLNLDSRLVYLNLGAASTSAAAQMGSRLEGDEDSSHSSHQNRHGSQGGSCDQTMYHHSHHDYN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1034 492 Pfam Domain of unknown function (DUF3420) 199 259 IPR024228 -
Alju01g1034 492 SMART ANK_2a 317 346 IPR002110 GO:0005515
Alju01g1034 492 SMART ANK_2a 282 312 IPR002110 GO:0005515
Alju01g1034 492 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Alju01g1034 492 MobiDBLite consensus disorder prediction 451 492 - -
Alju01g1034 492 SUPERFAMILY POZ domain 8 162 IPR011333 -
Alju01g1034 492 SMART BTB_4 25 164 IPR000210 GO:0005515
Alju01g1034 492 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Alju01g1034 492 Gene3D - 249 365 IPR036770 -
Alju01g1034 492 MobiDBLite consensus disorder prediction 401 427 - -
Alju01g1034 492 MobiDBLite consensus disorder prediction 398 427 - -
Alju01g1034 492 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Alju01g1034 492 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 486 IPR044284 GO:0099402
Alju01g1034 492 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Alju01g1034 492 CDD BTB_POZ_NPR_plant 8 164 - -
Alju01g1034 492 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Alju01g1034 492 FunFam regulatory protein NPR5 isoform X2 248 365 - -
Alju01g1034 492 Gene3D Potassium Channel Kv1.1; Chain A 4 197 IPR011333 -
Alju01g1034 492 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Alju01g1034 492 SUPERFAMILY Ankyrin repeat 276 360 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1034 Alju-ChrAlju01 7754635 7756927 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju01g1034 BTB 6.5e-14 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1034 01 7754635 7756927 Alju03g2202 03 49104205 49106538 CCT
Alju01g1034 01 7754635 7756927 Alju01g1034 01 7754635 7756927 ECH