Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g1013 ATGAAGTCCGGGTCCTTAGATTACTGGAGGAGTTACTTTCGAACGGCGAACTCGGATATATTTGATATCATCGACCATGCGATCATGGTAGCCGCTTCTGATTGTCCCAAAGAGTTTCGGTTGCGAAGGGATGGAATCGCGGAACGGTTGTTTTCTTGTCGGATGACTCGTTGTTTGGGTTGTGAGCGAGTGGAGTTGGCGGTGTCCGGTGTCGACGAGGAGTACGATGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCTGGTGCAAGTAAAGAGAGCAAGGCTCATAGTAGCAGAGATGACCATGGAGAGATGAATATGAACCACTTTAGCAATTATAGCTACGGAGAGGCTGAAGCATTGACGGATGAGATTGAAGAAGAGTCTCAACTGGTTGGTGAGATATTAAGGATCAAGGAAATTCTTCACACCTGCGAAGAAGAGTCTGATTCGGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTAATGGAACTGTCCATGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATGGATCAAAAGAGATTCGTCAACTTGCACGGACTCTTATTGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTACCACAACCAATGCAGGTTCTGAAGGTACCCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAGGAAGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCATCAATGGAGTTATCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGGCAGAGTGGGGAATTCTTCAAGAATCGGGAAAATGGCAGAAGACCAGCTCTGGACAATCAAAACATAGTAAAGAGGAAACAACAGGCTTCTGATAGGGGGGACGCCTTGGTCAAAGACAGAAAGAATCAGCAAGCAAAGAAAAATGAGGCTGTTGCGAAGGTAAATAAATCAGCAACTGTTGGTTCTGGTCCTGGCAGACCATTAAAATCAAGCATGCAACAAAGAGAGAATGTGGAGCCAAGGATGCTGCAAAAGATGGACAGGAGTGGTGTCCCTAAGAGGCCTCTTGCTGATCCGCAAGATAAGTTGAAGTATTCAGATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGAGGGATCGGCCACAGAAGTACACATTTCAAACCTATGAAGAACCAAAACAGGAATTGGGCTCAGGGACGAAGGTAG 1356 0.4594 MKSGSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRMTRCLGCERVELAVSGVDEEYDGGCKSGFDRDGAEVEAGASKESKAHSSRDDHGEMNMNHFSNYSYGEAEALTDEIEEESQLVGEILRIKEILHTCEEESDSELFESLRRLQLMELSMDLLKATEIGKAVNPFRKHGSKEIRQLARTLIDGWKEMVDEWVNATTTNAGSEGTPDSVNPSVVDEEEEEGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQSGEFFKNRENGRRPALDNQNIVKRKQQASDRGDALVKDRKNQQAKKNEAVAKVNKSATVGSGPGRPLKSSMQQRENVEPRMLQKMDRSGVPKRPLADPQDKLKYSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGIGHRSTHFKPMKNQNRNWAQGRR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g1013 451 CDD TFIIS_I 139 211 - -
Alju01g1013 451 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Alju01g1013 451 MobiDBLite consensus disorder prediction 90 112 - -
Alju01g1013 451 MobiDBLite consensus disorder prediction 90 111 - -
Alju01g1013 451 MobiDBLite consensus disorder prediction 357 384 - -
Alju01g1013 451 Coils Coil 389 416 - -
Alju01g1013 451 MobiDBLite consensus disorder prediction 274 291 - -
Alju01g1013 451 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Alju01g1013 451 MobiDBLite consensus disorder prediction 423 451 - -
Alju01g1013 451 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 224 IPR035441 -
Alju01g1013 451 MobiDBLite consensus disorder prediction 266 384 - -
Alju01g1013 451 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
Alju01g1013 451 MobiDBLite consensus disorder prediction 341 355 - -
Alju01g1013 451 MobiDBLite consensus disorder prediction 302 324 - -
Alju01g1013 451 SMART TFS2_5 137 212 IPR003617 GO:0005634
Alju01g1013 451 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 438 IPR044805 -
Alju01g1013 451 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g1013 Alju-ChrAlju01 7561534 7564138 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju01g1013 Med26 1.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1013 01 7561534 7564138 Alju01g1013 01 7561534 7564138 ECH