Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0991 ATGTCAAATAGCAGAAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGTGGGGGCGAGATGTGGTTTGCCCTAATTGTAACGAGGGATTTATTCAAGAACTTAATGATATGGTCATCAACCCTCTAGAATTCTTTGGATTAGACAATGTTGAAGAACGTGACCGGAGGTTCAGAATTATGGAAGCCTTCTCTGCCTTTATGAGGCATCGACCAGTAAATAGAAGCCATAGGCATGGCATCATAGTTGGATCAGATTCAATTCCTGAACATGGTCCAGGGTATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCGGTCAGATTGTCTGGACATGGTGGCTTCGAAGCACTTTTCAATGGGACTCCTGGAATTGGTCTGATGCAAGGCAATACAGGTGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTCGAACAGCTTTCTGCTAATGACAGGCGAGGTCCTCCTCCAGCTTCCAGGTCCTCAATAGATGCAATGCCGACTATTAAGATCACACATAAGCTTCTTCGTTCAGACTCACATTGTCCAGTTTGCCAAGATAAATTTGAATTGGGGTCGGAAGCAAGGCAAATGCCATGTAAACATATATATCACTCAGATTGTATTGTTCCTTGGTTGGTACAGCATAACTCCTGCCCTGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGCAGCAACCGTGGCTCCAATGGTAGAACTAGAGGCAATTCTGATAGTAATAGTGGAAGTGGAAGGGTAAGGGAGAACCAGGGTAGGCGGAACCCATTCTCGTATTTTTGGCCTTTCCGTTCATCTAATTCTAGCAACAATGGAGCAGGAGGAAGCAGCTCACCAACACAGCCTATCCCTGAGAATAGCCACCACACCGGCTATTCTGGATGGCCATTTGAGTAA 927 0.4585 MSNSRNTHWCYSCRRPVQLWGRDVVCPNCNEGFIQELNDMVINPLEFFGLDNVEERDRRFRIMEAFSAFMRHRPVNRSHRHGIIVGSDSIPEHGPGYAPLLLFGGQIPVRLSGHGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITHKLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRTRGNSDSNSGSGRVRENQGRRNPFSYFWPFRSSNSSNNGAGGSSSPTQPIPENSHHTGYSGWPFE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0991 308 SUPERFAMILY RING/U-box 165 232 - -
Alju01g0991 308 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Alju01g0991 308 CDD RING-H2_RNF126-like 185 226 - -
Alju01g0991 308 MobiDBLite consensus disorder prediction 233 308 - -
Alju01g0991 308 MobiDBLite consensus disorder prediction 233 261 - -
Alju01g0991 308 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Alju01g0991 308 Pfam Ring finger domain 184 226 IPR001841 -
Alju01g0991 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 230 - -
Alju01g0991 308 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Alju01g0991 308 MobiDBLite consensus disorder prediction 270 298 - -
Alju01g0991 308 SMART ring_2 185 225 IPR001841 -
Alju01g0991 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0991 Alju-ChrAlju01 7379289 7380215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0991 120 230 C3H Transcription Factor Family AT5G01980 42.609 1.04e-25 104