LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0963	ATGGGATCTCAAGGAGAAGCAACAACCCAAGAGCCAAAAACACAATCTTTGGCATACCAAGGATCCTCCTTATACAACCTAACTCTTGATGAAGTACAGAACCAGCTTGGAAATTTAGGGAAGCAACTAGGAAGCATGAATCTTGATGAACTGCTAAAGAGTGTGGGAACTGCAGAAACTACTGGTCAACTAGCTTCTGGGTCGTCGTCTCTGAATCGACAAAACAGCATGACATTATTATCTGGGGATGTTAGAAAGAAAACTGTTGATGAAGTTTGGAGAGATATACAACAACACAAGAAGAGCAATAATAATAAGCAAGATGGGAAATCTCAGGAGAGACAGCCAACTCTAGGAGAGATGACTCTTGAGGATTTTCTTGTGAAGGCAGGAGTGATGTTTGATTCAAATGTTGCTTCTTCTGATCAGCACAATATTTCAGAACAAGCTCATTGGATCCAATACCAGCTCTCTTCTTCACTGCAACAGCATCATCATCAAAATCATCATGATGTGATGGCAGGTTTAATGACTGGCCTTGGAGTTCAACAACAGCAGCCTAATTTGCCAGTAGCAATAGTAGCGAACCCGGTTTTGGATTCGTCCTACTCTGAAAATATGGTGGCAACAACGATGTCACCATCTTCTTTGATGGGTAAGTTATCAGATACACATAGTCCAGGAAGGAAGAGGGAGGCTTCTGGTGGTGATGTGGTTGAGAAAACCATGGAGAGAAGGAAAAAGAGGATGATAAAAAATAGGGAATCTGCAGCTCGGTCAAGAGCAAGAAAGCAGGCTTACACGCAGGAGCTGGAGATTAAAATCTCACATTTAGAAGACGAGAATGAAAAGCTTAAAAGACAGTATGAAATAGAGAGAGTGTTGCCATATGTTCCACCAACTGAGACTAAGCATCAGCTTCGCAGAACAAGTTCAGCTTCTTTTTGA	948	0.4177	MGSQGEATTQEPKTQSLAYQGSSLYNLTLDEVQNQLGNLGKQLGSMNLDELLKSVGTAETTGQLASGSSSLNRQNSMTLLSGDVRKKTVDEVWRDIQQHKKSNNNKQDGKSQERQPTLGEMTLEDFLVKAGVMFDSNVASSDQHNISEQAHWIQYQLSSSLQQHHHQNHHDVMAGLMTGLGVQQQQPNLPVAIVANPVLDSSYSENMVATTMSPSSLMGKLSDTHSPGRKREASGGDVVEKTMERRKKRMIKNRESAARSRARKQAYTQELEIKISHLEDENEKLKRQYEIERVLPYVPPTETKHQLRRTSSASF	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0963	315	SMART	brlzneu	241	313	IPR004827	GO:0003700\|GO:0006355
	Alju01g0963	315	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	243	290	IPR004827	GO:0003700\|GO:0006355
	Alju01g0963	315	CDD	bZIP_plant_BZIP46	245	290	-	-
	Alju01g0963	315	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	19	314	IPR043452	GO:0003700\|GO:0045893
	Alju01g0963	315	FunFam	ABSCISIC ACID-INSENSITIVE 5-like protein 2	243	295	-	-
	Alju01g0963	315	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	248	263	IPR004827	GO:0003700\|GO:0006355
	Alju01g0963	315	MobiDBLite	consensus disorder prediction	215	240	-	-
	Alju01g0963	315	SUPERFAMILY	Leucine zipper domain	245	291	IPR046347	GO:0003700\|GO:0006355
	Alju01g0963	315	MobiDBLite	consensus disorder prediction	224	240	-	-
	Alju01g0963	315	Gene3D	-	243	294	-	-
	Alju01g0963	315	Coils	Coil	268	295	-	-
	Alju01g0963	315	MobiDBLite	consensus disorder prediction	97	119	-	-
	Alju01g0963	315	Pfam	bZIP transcription factor	245	288	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0963	Alju-ChrAlju01	7172349	7173874	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0963	9	315	bZIP Transcription Factor Family	AT3G56850	50.301	2.20e-89	267

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju01g0963		bZIP_1	1.8e-12	CL0018