Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0928 ATGAAAGGGAAAAGAGAGGAAGAGAAGGCAGGAAGAGAAGGCAGGTGGAGGTTGTTGATTTTGAGTTTGGAAGTCACCAAACTGAGAAATGCTTTTGGAGTTACATTTGAGAATGCGAAAACTGTGGCAAAGAGACTGCCAGATTCTTCAGGGGAGATCAACAACAACCGCAGTAATTCCGCTTCCCTTTCCTCTTTCTTCATTTTCGTTCACCCCAATCATCAACAAACGCAACCGTTCCCCCCATCACTCTCTGCTTCCCTCCCGAAAATAATTCACTTCGTCGGAACTCGGGAGCCTTTCCGTTTTCTTCGCGGGGCTCTAAATAACTTTTTTGAGGCCATGGGTCATCCTGGTGAGATCGAGCCCAACAAATCTGAGATTGGATTTCAGATTCTAAGCCCTTCCTTCATGGAGACCAGAGCAACCGATCAGAGCGTCAGCAAAGTCGACACAAACGGCCTGTCCTTGAAACTGGGTGAACAAGAAGGAGAAGCTAAGAGGCCTGATGCCGGCAACAGTGGCCACCCTAAGCTCTGTGCCAGAGGCCACTGGAGGCCCGGTGAGGATGCCAGGCTCAAAGAGCTGGTGGTTCAGTATGGTCCTCAAAACTGGAACCTGATCGCCGAACATCTCCAAGGACGATCAGGCAAGAGTTGCAGATTGAGGTGGTTTAATCAGCTGGATCCGAGGATTAACAGAAGGGCTTTCTCGGAGGAAGAAGAAGAGAGGCTGCTGGCTGCTCATAAGGCGTACGGTAACAAGTGGGCTTTGATCGCTAGACTGTTCCCAGGGAGGACCGACAATGCAGTGAAGAACCACTGGCACGTGATCATGGCGAGGAGGCAGAGAGAGCAGTCTCACGTCTTCAGGAGGAGGAAACCAACTTCTGACAACAACAATATTGCAGAGGGATTAAAACTCAGTCTGAGCAACAATGCAGGCAGTGAATCCAGCATGTCAAGCACTAGAGACGAGTCTGCTTCAACCTGCACCAATCTCTCCCTCACTCCCTCCTCCGCTAAACCCTCTCCATTCCAAGGCCATGGAACACTTATCGGAGGATCGGGGGATGTGGGTTTGGACAAGTTATTGGGGCAATCAAATAATAGTTCAGACTCAAAGTCGGAAGTATCAGTGAGCGAGTCAGTGGGCACCAGCAACAACAACAGCAGCAAGAGTTTGTCATATACCGGAGAAAGTGAAAACGTGGGGGATAGGATGAAGAAGATGGGGTTCATTGATTTTCTGGGGGTCGGAGCTGCTGCATAG 1272 0.4992 MKGKREEEKAGREGRWRLLILSLEVTKLRNAFGVTFENAKTVAKRLPDSSGEINNNRSNSASLSSFFIFVHPNHQQTQPFPPSLSASLPKIIHFVGTREPFRFLRGALNNFFEAMGHPGEIEPNKSEIGFQILSPSFMETRATDQSVSKVDTNGLSLKLGEQEGEAKRPDAGNSGHPKLCARGHWRPGEDARLKELVVQYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKAYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPTSDNNNIAEGLKLSLSNNAGSESSMSSTRDESASTCTNLSLTPSSAKPSPFQGHGTLIGGSGDVGLDKLLGQSNNSSDSKSEVSVSESVGTSNNNSSKSLSYTGESENVGDRMKKMGFIDFLGVGAAA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0928 423 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Alju01g0928 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 228 IPR017930 -
Alju01g0928 423 FunFam MYB transcription factor 182 233 - -
Alju01g0928 423 PANTHER MYB PROTEIN-RELATED 182 349 - -
Alju01g0928 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 283 IPR017930 -
Alju01g0928 423 MobiDBLite consensus disorder prediction 363 401 - -
Alju01g0928 423 Pfam Myb-like DNA-binding domain 182 228 IPR001005 -
Alju01g0928 423 Pfam Myb-like DNA-binding domain 234 277 IPR001005 -
Alju01g0928 423 ProSiteProfiles Myb-like domain profile. 182 228 IPR001005 -
Alju01g0928 423 Gene3D - 236 297 - -
Alju01g0928 423 MobiDBLite consensus disorder prediction 160 179 - -
Alju01g0928 423 CDD SANT 185 226 IPR001005 -
Alju01g0928 423 SUPERFAMILY Homeodomain-like 182 275 IPR009057 -
Alju01g0928 423 MobiDBLite consensus disorder prediction 299 346 - -
Alju01g0928 423 FunFam MYB transcription factor 235 305 - -
Alju01g0928 423 MobiDBLite consensus disorder prediction 284 298 - -
Alju01g0928 423 Gene3D - 182 233 - -
Alju01g0928 423 CDD SANT 245 276 IPR001005 -
Alju01g0928 423 MobiDBLite consensus disorder prediction 284 402 - -
Alju01g0928 423 SMART sant 233 281 IPR001005 -
Alju01g0928 423 SMART sant 181 230 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0928 Alju-ChrAlju01 6884774 6887117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0928 172 422 MYB Transcription Factor Family AT5G17800 49.810 4.40e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g0928 Myb_DNA-binding 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0928 01 6884774 6887117 Alju01g0928 01 6884774 6887117 ECH