Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0913 ATGCGCCTGGATGACTCCTCATTATGTTGTGAACTCTGTGGGAAGGTGTTGGAAAATTTGTATCTTTCTCAAGAGGCCACATTCTTTAAAGACGTATCTGGGCAGAGTAAACTATCTGGTAATTTTGTGAAAACAATTCAAAGCGAGTATTCTGCATCCCGCCAAAGAACATTAGAAAGAGCACTTGATGACATAAGATACTTAAGTCAAAACCTTGGAGTGGAAGATACTCATTTGTCCACCCAAGCATTGGCCTTTTATAAAATAGCACTTGAGCGGAATTTTACAAAGGGACGAAGATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGAAAATAATAAGCCATACCTTCTCATTGACTTTTCAAATTATTTAAGGACCAATGTCTATGTTCTAGGTGCAGTATTTTTGCAGCTTTGTAAAGTATTAAGGCTTGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCCAGTCTTTTTATTATTAAATATACAAAGAATTTGTTAAATCAAAGGAATATGGTTGTCAGTGATACTGCACTGAGCATTGTTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGCTTATGTGGTGCAGCATTGTACATAGCTGCCCTTGCACATGGTTTTAAATGCTCAAAATCAGACATCCTGAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTCGAGTTTGAGAATACAACCTCTGCAAGCTTGACAGTTGAGGAGTTGAATATGATGGCAAAAGAGCGTGGAGAAATTCCCATTGAAAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATATACTGTGTGAACACAAGGATAGTGGCGTCCCACATTATGCCCATGGATTATGTCAAAAATGTTATAAGGAATTTGTTAAACTCTCTGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACTTTGTGAGGAAAGTGGCAACCAATCAAGTGATTTGGCAAAAGCGTCAAATGGTGAGTGTGCAGGCAGGAAAGAAGAATTGCATGCTCCTGGGCCAGAAATTGTTGGAGCCGATACTGAGCAAATGGCTACAAAAGATGGTGGGAATGATGAATCGCAGAGAGAAGATACGAGTGCTAAAACGCATAATGAATCAGAAAGTCTCTCTGACATCGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGAATTTCAAGACACTTATATGGACTGAAATGAACAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCCGCTGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAACTGTTCTGAGGATATGCTAGCAGCAAAAGAGCTTGCTGAATCTGCCGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGTGCCCAAGAGGCAAAAAATTCAGGTCCTGCTCAATCTGCCGCTGAGGCTACACGGAAAATGTTGATAAATAAGAGGCTTAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGATGATATTGAGGCCCCAGAGAACAAGAAAGTCCGATTCGAGCTGGACCCTGATAAAGATGATAAATTAGAGCCTGAGCTAGAGGACAAAATCAAAGGAGATTATAAGGGATCAATTGATGAATTTGAGTACGAAGGTTATATAGGCAAGGAAAACAATTTGTATGATGAGAAATTGACGGATTATGATTATGGAGATGATGGTGATGGTCATGGTGATGATTCTGGCTATGATTACTGA 1824 0.4128 MRLDDSSLCCELCGKVLENLYLSQEATFFKDVSGQSKLSGNFVKTIQSEYSASRQRTLERALDDIRYLSQNLGVEDTHLSTQALAFYKIALERNFTKGRRSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIIKYTKNLLNQRNMVVSDTALSIVASMKRDWMQTGRKPSGLCGAALYIAALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTTSASLTVEELNMMAKERGEIPIEKPNCGSEEHVSKDILCEHKDSGVPHYAHGLCQKCYKEFVKLSGGLDGGLDPPAFQRAERDRMTKSLCEESGNQSSDLAKASNGECAGRKEELHAPGPEIVGADTEQMATKDGGNDESQREDTSAKTHNESESLSDIDDLEVEGYLHNEEEKNFKTLIWTEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEAPENKKVRFELDPDKDDKLEPELEDKIKGDYKGSIDEFEYEGYIGKENNLYDEKLTDYDYGDDGDGHGDDSGYDY 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0913 607 FunFam Transcription factor IIIB subunit 160 249 - -
Alju01g0913 607 FunFam Transcription factor IIIB 90 kDa subunit 50 153 - -
Alju01g0913 607 MobiDBLite consensus disorder prediction 336 407 - -
Alju01g0913 607 SUPERFAMILY Cyclin-like 159 256 IPR036915 -
Alju01g0913 607 MobiDBLite consensus disorder prediction 379 407 - -
Alju01g0913 607 Pfam Transcription factor TFIIB repeat 157 246 IPR013150 GO:0017025
Alju01g0913 607 Pfam Transcription factor TFIIB repeat 55 144 IPR013150 GO:0017025
Alju01g0913 607 Gene3D Single helix bin 395 446 - -
Alju01g0913 607 SUPERFAMILY Cyclin-like 61 150 IPR036915 -
Alju01g0913 607 SMART cyclin_7 163 246 IPR013763 -
Alju01g0913 607 SMART cyclin_7 63 145 IPR013763 -
Alju01g0913 607 CDD CYCLIN_TFIIIB90_rpt2 157 247 - -
Alju01g0913 607 CDD CYCLIN_TFIIIB90_rpt1 57 147 - -
Alju01g0913 607 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 7 519 IPR000812 GO:0006352|GO:0070897
Alju01g0913 607 Coils Coil 476 496 - -
Alju01g0913 607 PRINTS Transcription initiation factor IIB signature 200 216 IPR000812 GO:0006352|GO:0070897
Alju01g0913 607 PRINTS Transcription initiation factor IIB signature 3 23 IPR000812 GO:0006352|GO:0070897
Alju01g0913 607 PRINTS Transcription initiation factor IIB signature 106 125 IPR000812 GO:0006352|GO:0070897
Alju01g0913 607 Gene3D - 50 152 - -
Alju01g0913 607 MobiDBLite consensus disorder prediction 474 505 - -
Alju01g0913 607 Pfam Brf1-like TBP-binding domain 404 529 IPR011665 -
Alju01g0913 607 Gene3D - 160 254 - -
Alju01g0913 607 MobiDBLite consensus disorder prediction 478 492 - -
Alju01g0913 607 MobiDBLite consensus disorder prediction 587 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0913 Alju-ChrAlju01 6766536 6778657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0913 1 510 Inorganic Solute Cotransporters AT2G01280 41.538 1.53e-106 328