Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0874 ATGGAAATTCAATTCCAGCAGCCAAAGCAGCAGCATCAGAAAGCAGGCATTCCGATCAGCAAAGTGGGGAAATTTAAAGGAAGAAACAGAAGCCGAGGAAACGCAAACAAGTTTGTAGGGGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAAGCTGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGCACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTGGCCTCCCGGATTAGGAATCTTCTAAACAGCAAAAAAGCTGCAACTAAACAACAACAACAAAAAGATCGTGTGGTAGCAGCCTCTGCCCCTAAAGCCAGAAGGACCAATACTAGCACTACTAGTAGTACTAGTGCTAGTATTAGCAGTAGTTCTAGCAATAATATTGACAGCAACGAAAGTTCTCTTTCCAGTGGGACAGTCCAAGATACCTCTCTGTTTGATGATGCTTATAGACCAGATATGAGCTACTGCAGGGAGGAATTTGGGTTTGGTTCCACGTCCAATCTTTCATGGGGTGGTTTTGGACCGGTTTTTGATCGGTTTCCTCTTCCTCAGGTTTCAGATGTTGCTAAGAATGATGGGGGTATGTCTAATGTTGGTGACTTGGATCTTTTAGAATTTGAGAGGATGAAAGTTGAGAGGCAAATTTCAGCTTCACTGTATGCAATTAATGGAGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCACTGTTCTGTTAA 846 0.4515 MEIQFQQPKQQHQKAGIPISKVGKFKGRNRSRGNANKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNSKKAATKQQQQKDRVVAASAPKARRTNTSTTSSTSASISSSSSNNIDSNESSLSSGTVQDTSLFDDAYRPDMSYCREEFGFGSTSNLSWGGFGPVFDRFPLPQVSDVAKNDGGMSNVGDLDLLEFERMKVERQISASLYAINGVQEYMETVQDSSEALWDLPPLCSLFC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0874 281 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 MobiDBLite consensus disorder prediction 134 170 - -
Alju01g0874 281 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Alju01g0874 281 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Alju01g0874 281 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Alju01g0874 281 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Alju01g0874 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 246 - -
Alju01g0874 281 MobiDBLite consensus disorder prediction 114 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0874 Alju-ChrAlju01 6487713 6488558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0874 24 281 AP2-EREBP Transcription Factor Family AT5G19790 43.233 6.15e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g0874 AP2 6.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0874 01 6487713 6488558 Alju01g0874 01 6487713 6488558 ECH