Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0859 ATGGCAATTTCACGAACAGGAGTATACGTTGACGACTATTTGGAGTATGCAAGCACATTGCCTGCTGAACTCCAGAGATTGTTAAACACCATCAGGGAACTTGATGAAAGATCCCAATCTATGATAAACCAGACCAGGCAATGCACTAGGTACTGTTTAGGGCTGTCTTCACAGGGTTCTAAGAAGGTTAATCATAATAGTAGCCATAGCTATAATAACATTAACCCCAGCGAAGAAGACGATGCAACAATTGAGGAAATGCATAAAGAAATTGAGGCTAATCAGGACAGTGCTTTAAGTCTATGTACAGAGAAGGTTTTGTTGGCACAGCAGGCACATGGCCTGATAGATAGCCATATAAAACGACTTGATGAGGATTTGAACAACTTTTCTGAAGATCTAAAGCAAGAAGGCAAAATACCACCAGATGAACCCGCTATTCTCCCCTCCTTGCCTATAGTCCCAAAAAGTGAAAAACGCAAATCCTTATATGGAACTCCTCTATCAAAGAGACTTGATCACAGGGATAGAGATTGGGATCGGGAGCGTGATAGAGATTTTGATCTTATGCCCCCACCAGGAAGCCATAAGAGGGAGTATGCAACTCCCATGGATACTGATCAACCAGTTGATCCGAATGAACCTATATACTGTATCTGTCATCAGGTGTCTTATGGAGATATGATAGCCTGTGACAATGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCGTGTGTTGGCTTAACTACGGAAACAAGATTCAAGGGGCAGTGGTATTGTCCTACTTGCCGACCCTACTTTCAATGA 810 0.4247 MAISRTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINQTRQCTRYCLGLSSQGSKKVNHNSSHSYNNINPSEEDDATIEEMHKEIEANQDSALSLCTEKVLLAQQAHGLIDSHIKRLDEDLNNFSEDLKQEGKIPPDEPAILPSLPIVPKSEKRKSLYGTPLSKRLDHRDRDWDRERDRDFDLMPPPGSHKREYATPMDTDQPVDPNEPIYCICHQVSYGDMIACDNENCRGGEWFHYSCVGLTTETRFKGQWYCPTCRPYFQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0859 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 266 IPR013083 -
Alju01g0859 269 Gene3D - 5 128 - -
Alju01g0859 269 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Alju01g0859 269 SMART PHD_3 217 265 IPR001965 -
Alju01g0859 269 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
Alju01g0859 269 SMART ING_2 9 130 IPR024610 -
Alju01g0859 269 Coils Coil 24 44 - -
Alju01g0859 269 Coils Coil 268 269 - -
Alju01g0859 269 CDD ING_plant 17 127 - -
Alju01g0859 269 Pfam PHD-finger 217 266 IPR019787 -
Alju01g0859 269 SUPERFAMILY FYVE/PHD zinc finger 192 266 IPR011011 -
Alju01g0859 269 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Alju01g0859 269 MobiDBLite consensus disorder prediction 183 202 - -
Alju01g0859 269 CDD PHD_ING 217 264 - -
Alju01g0859 269 FunFam PHD finger protein ING 209 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0859 Alju-ChrAlju01 6392721 6396292 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju01g0859 ING 5.3e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0859 01 6392721 6396292 Alju01g0859 01 6392721 6396292 ECH