Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0857 ATGGCACAGTTGACAACTCACGGTCGCTTAAAGACACTCTTTAATGGCGAGGGATTCTCATGTCCTTCGGAGCAGAAGGACCCGTTTCACTTCAAGTTCCAATCAACCCAGAGCCGTGAGCTAAAAGTTAGGTGCATAGGTTCTTTTTCATCATGCCCGAGTAGGAAAAGGAACCGTTGCAATGCGCAGGCAATCCCCAGTCCCACTTTTAGCAATGGCAGTGTTCATGTCGAGAATCATCCTGATCATGATGATTATGAGTTTGAGAACGATAGCCTAGCTTCTTTTAGAGGCCTGGTGTTGGATGTATCGTACAGGCCAGTTAATGTTGTAGGCTGGAAACGTGCTATATGTTTGGAGTTTATGGAGAAGGCTGATGTACTTGAGTATTATGATCAGACTGTGAACTCACCAAGTGGATCTTTCTATATTCCAGCTGTCTTAAGGGTTCCTGATCTACATCAGGTTGTCAAAAGAAGAGTTGTCAAGAGCAATCTTAATAGGAAGAATATACTATATCGGGACTACTACACTTGTCAGTATTGTTCTTCACGTGAGAATTTGACCATTGACCATGTTGTGCCCGCTTCACTGGGTGGAGAATGGAAATGGGAAAATCTGGTTACTGCTTGTGCCAAATGTAACTCAAGGAAAGGTCAAAAAACTTTAGAAGAAGTAAAAATGAAGCTAATCAAGACTCCCAAGGCACCAAAGGACTATGACATACATACCATACCCCTAACCAGCGCAGCCCTAAGAATGTTGACGGTAAGAAAGGGAACACCTGAAGAATGGCTTCAGTATCTATCAAGTGTGTCCTACACAAAGCAACTTTACTATGAGTCCCTCTTTGAGGCCCCCTCCAATCGTACAGTTATTATGAGCCCCTCGTCCAGACCCTTTGATTTGGACCTCTTAGAATGGAAGGTTGTGGGTGAAATTGGACCAGCAGAAGTAGAAAGCCATGGAAGTGAGGACAAAGTTCTGCAAAAGTGGAAGAGGCATTTGGATATGAGAGGGTTTGTGTTGTGTGTGACTTGTGTGACACAAATTTTGGCTTTCTTCTTCCTCTTCCTCTCGTTTCTGCTGTCAGTGGCCATGGATGTGTGCCGGAATGTATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTTCTTTCCCCTTCTTGCTCAAAGCTTTCTTCCTTCTCAACCAGCCTCGATGACCTCTTCTCTGCTCAGAACACGGAGGTGGATGTCGGATTGGAGTGGCTGTCAGTGTTTGTTGAAGACTGCTTTTCAAGCCAAGCAAGCTGCCTCTTGGCACCTCCTGATGTTCATCAAGCTACAACCACAACCTCCAAACCTTCACAACCATTGCAGAGACCCCACCAGAATGAGTCTTCTTTGCAAAATTTTCCGGTACCCGGAAAAGCCAGAAGCAAAAGGAAGAGACTTTCAGCCCCAAGAGCCAAAGACCCTTTAAGCATCTGGTCGCATCATTTAAACCCACAAAACGAAGCCATAAGCTCAGACCCTCCCCTGCTCAAACAGGCTTACTGGTTAGCAGACAGTGAACTCATCGTCCCCAAGAAGAAGGCAGAGGAAGAGGAAGAGGAAGAAGAAGAGATGGAGAAGAGGATGATGGTGAGGAAGGAGTCGGAGAGTGAGGTCAGCAATGGGCAAAATCCAATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAAACACTCTGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCAACTTTTGTGAGCTACTTGCACTCCAATTCCCACAAGAAGGTCATGGAGATGAGGATGTCTCTTGTTTCTTCCTCTATTCCCAGAGACCACCAGTGA 1911 0.4647 MAQLTTHGRLKTLFNGEGFSCPSEQKDPFHFKFQSTQSRELKVRCIGSFSSCPSRKRNRCNAQAIPSPTFSNGSVHVENHPDHDDYEFENDSLASFRGLVLDVSYRPVNVVGWKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPDLHQVVKRRVVKSNLNRKNILYRDYYTCQYCSSRENLTIDHVVPASLGGEWKWENLVTACAKCNSRKGQKTLEEVKMKLIKTPKAPKDYDIHTIPLTSAALRMLTVRKGTPEEWLQYLSSVSYTKQLYYESLFEAPSNRTVIMSPSSRPFDLDLLEWKVVGEIGPAEVESHGSEDKVLQKWKRHLDMRGFVLCVTCVTQILAFFFLFLSFLLSVAMDVCRNVSVSGECKQEQVLSPSCSKLSSFSTSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSQASCLLAPPDVHQATTTTSKPSQPLQRPHQNESSLQNFPVPGKARSKRKRLSAPRAKDPLSIWSHHLNPQNEAISSDPPLLKQAYWLADSELIVPKKKAEEEEEEEEEMEKRMMVRKESESEVSNGQNPMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSSIPRDHQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0857 636 ProSitePatterns GATA-type zinc finger domain. 561 586 IPR000679 GO:0006355|GO:0043565
Alju01g0857 636 ProSiteProfiles GATA-type zinc finger domain profile. 559 591 IPR000679 GO:0006355|GO:0043565
Alju01g0857 636 CDD ZnF_GATA 560 607 IPR000679 GO:0006355|GO:0043565
Alju01g0857 636 Pfam HNH endonuclease 179 229 IPR029471 -
Alju01g0857 636 MobiDBLite consensus disorder prediction 439 484 - -
Alju01g0857 636 Coils Coil 523 546 - -
Alju01g0857 636 FunFam GATA transcription factor 551 635 - -
Alju01g0857 636 SMART HNH_5 166 216 IPR003615 -
Alju01g0857 636 MobiDBLite consensus disorder prediction 439 467 - -
Alju01g0857 636 CDD HNHc 168 219 IPR003615 -
Alju01g0857 636 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 556 619 - -
Alju01g0857 636 SMART GATA_3 555 609 IPR000679 GO:0006355|GO:0043565
Alju01g0857 636 PANTHER SLL1193 PROTEIN 92 270 - -
Alju01g0857 636 Gene3D - 550 622 IPR013088 GO:0006355|GO:0008270
Alju01g0857 636 Pfam GATA zinc finger 561 595 IPR000679 GO:0006355|GO:0043565
Alju01g0857 636 MobiDBLite consensus disorder prediction 524 557 - -
Alju01g0857 636 Gene3D - 152 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0857 Alju-ChrAlju01 6370595 6380578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0857 386 623 C2C2-Gata Transcription Factor Family AT4G32890 40.964 2.31e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju01g0857 HNH_5 1.8e-16 CL0263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0857 01 6370595 6380578 Alju01g0857 01 6370595 6380578 ECH