Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g0828 | ATGAGTTTTCAAGATCTTCAGGGCGGGGCCAAGCGACCCACTTCCCGAACTCAATCGCCGTCGCAGGCGGTGGCTGCCGGAATTTTCCAGATCAATACAGGCGTGGCCACTTTCCGACGACTCGTTGATGCCATCGGAACCGTCAAAGACACCGTCGGTCACCGCCAGAAGCTGCACGAAACGAGGCAGCGGATATTGCAGCTGGTGAAGGATACTTCTGCAAAGCTCAAAGCCTTGAGCGAATCCGATCTTGCTGCCGATGCCGATTCTGGTAAGAAAATTGAAGATGCTAAGCTGGCGAGAGATTTTCAAACCACATTGCAAGAATTCCAGAGAGTGCAACAACTTGCTTCTGAGCGCGAATCTACCTACCTTCCTGCTGCTCCTGCTTCTTCTTTACCTGCAAGCTCTGGCTCTGTTGGGGAATCAACTGACATAGGTCAGGAAAGCCAACCTTTAATCAGGGAACAAAAGAGGCAGGAGATACACTTATTAGATAGTGATATTGCATTCAATGAGGCCATGATTGAAGAAAGAGAGCAGGGCATCAAGGAGGTAGAGGTGCAGATTGGACAAGTAAATGAAATTTTCAAGGACCTAGCCGTTCTGGTTCATGAACAGGGGGTGGTTATTGATGATATTCAATCAAATATTGATGCTTCTGGGGGCGCAACAACCCAGGCTACTACACAGCTAGCCAAGGCTTCCAAAAATATGAAATCTAAATGTTCATGGTGTTGGTGGGTGCTTATAATTCTTGTTATAGTGGTGGTCGTGGTGCTTATTTTTCTCATTTTTTAG | 801 | 0.4719 | MSFQDLQGGAKRPTSRTQSPSQAVAAGIFQINTGVATFRRLVDAIGTVKDTVGHRQKLHETRQRILQLVKDTSAKLKALSESDLAADADSGKKIEDAKLARDFQTTLQEFQRVQQLASERESTYLPAAPASSLPASSGSVGESTDIGQESQPLIREQKRQEIHLLDSDIAFNEAMIEEREQGIKEVEVQIGQVNEIFKDLAVLVHEQGVVIDDIQSNIDASGGATTQATTQLAKASKNMKSKCSWCWWVLIILVIVVVVVLIFLIF | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g0828 | 266 | Gene3D | - | 9 | 132 | - | - | |
| Alju01g0828 | 266 | Pfam | SNARE domain | 210 | 261 | IPR000727 | - | |
| Alju01g0828 | 266 | Pfam | Syntaxin-like protein | 25 | 124 | IPR006011 | GO:0016020 | |
| Alju01g0828 | 266 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Alju01g0828 | 266 | SUPERFAMILY | t-snare proteins | 18 | 228 | IPR010989 | GO:0016020|GO:0016192 | |
| Alju01g0828 | 266 | CDD | SNARE_Qa | 176 | 234 | - | - | |
| Alju01g0828 | 266 | MobiDBLite | consensus disorder prediction | 125 | 151 | - | - | |
| Alju01g0828 | 266 | SMART | tSNARE_6 | 168 | 235 | IPR000727 | - | |
| Alju01g0828 | 266 | MobiDBLite | consensus disorder prediction | 129 | 151 | - | - | |
| Alju01g0828 | 266 | FunFam | Syntaxin-22 like | 15 | 128 | - | - | |
| Alju01g0828 | 266 | Gene3D | - | 170 | 266 | - | - | |
| Alju01g0828 | 266 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 173 | 235 | IPR000727 | - | |
| Alju01g0828 | 266 | PANTHER | SYNTAXIN | 22 | 255 | IPR045242 | - | |
| Alju01g0828 | 266 | SMART | SynN_4 | 8 | 122 | IPR006011 | GO:0016020 | |
| Alju01g0828 | 266 | FunFam | Syntaxin-22 like | 166 | 266 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g0828 | Alju-ChrAlju01 | 6115763 | 6117865 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g0828 | 1 | 253 | SNARE and Associated Proteins | AT5G46860 | 57.977 | 5.84e-94 | 276 |