LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0824	ATGAAAGAAACTGATAACCAGAAGCCAAAAGGGGAAGAGTGGAAGACTGTGGAACATATCATTGATTTGATAGCTCGAATTGGTTGCACATGGTACCTAATGAACACATCAAATTCGTCATCGCCTTCCAATGCGAAAAGGAAGCAAACGGCGACAACAAGCGCCAAGACAGTTCCAGAGCAACAACATGGAACGGCGTGGGGAGGAAGGTACCTGGGTGTTCGGAGAAGGCCGTGGGGAAGATACGCGGCGGAGATCAGAGACCCGTCGACCAAAGAAAGGCATTGGCTCGGCACCTTCGACACTGCTGAGGAAGCTGCCTTAGCCTACGACAGAGCAGCACGCTCCATGCGTGGCTCTCGCGCTCGAACCAATTTCGTATACTCAGATACTCCTCCCGGCTCCTCCGTAACTCCCATTATCTCCCCTGACGAGGAATCACACCAGAACCAGGACTTCTCGTCTCTCTTCGCTTCGAACTTGCTCGCTCAACAACCCAACCCTGCTGATCGGCCGACGGAATGCGCCCTCTTGGGCGGGTTCTTGGGCGTAAAGGATGCTGATGCTGGTGCCTGGGCAGTTTCATCGGGGATTTATTCTCAGCAATATCAATCCCCCACCACGACGGACGTGCATAACGTGCCCCATTTCCGCCAATTGTATGATGATAGCAACACTGAACTCCCGCCATTGCCACCGGATATTACAAGCTCCTTAGGTTACGAAATGGGCCATGAGTTTTACGATAGTGGCTTTGGATATTCGGAGCAAGACACAGGAACGGGATTTGAGGCATTAACGAGCTGGCCTTCGTGCTCGTATACGGGCTTGGATTCGGTTGATTACATGCATAGCCCACTGTTGAGCACAATGCCTAAGGTGTCAGAAAAGATGCCGGAAGGTTTTGAATTGGGAAGTTCCTCCTACTTCTTCTGA	936	0.516	MKETDNQKPKGEEWKTVEHIIDLIARIGCTWYLMNTSNSSSPSNAKRKQTATTSAKTVPEQQHGTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTPIISPDEESHQNQDFSSLFASNLLAQQPNPADRPTECALLGGFLGVKDADAGAWAVSSGIYSQQYQSPTTTDVHNVPHFRQLYDDSNTELPPLPPDITSSLGYEMGHEFYDSGFGYSEQDTGTGFEALTSWPSCSYTGLDSVDYMHSPLLSTMPKVSEKMPEGFELGSSSYFF	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0824	311	ProSiteProfiles	AP2/ERF domain profile.	70	127	IPR001471	GO:0003700\|GO:0006355
	Alju01g0824	311	SMART	rav1_2	70	133	IPR001471	GO:0003700\|GO:0006355
	Alju01g0824	311	MobiDBLite	consensus disorder prediction	37	62	-	-
	Alju01g0824	311	PRINTS	Ethylene responsive element binding protein signature	93	109	IPR001471	GO:0003700\|GO:0006355
	Alju01g0824	311	PRINTS	Ethylene responsive element binding protein signature	71	82	IPR001471	GO:0003700\|GO:0006355
	Alju01g0824	311	CDD	AP2	70	126	IPR001471	GO:0003700\|GO:0006355
	Alju01g0824	311	FunFam	Ethylene-responsive transcription factor 2	70	128	-	-
	Alju01g0824	311	SUPERFAMILY	DNA-binding domain	70	128	IPR016177	GO:0003677
	Alju01g0824	311	Gene3D	AP2/ERF domain	69	128	IPR036955	GO:0003700\|GO:0006355
	Alju01g0824	311	MobiDBLite	consensus disorder prediction	37	61	-	-
	Alju01g0824	311	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	46	179	-	-
	Alju01g0824	311	Pfam	AP2 domain	71	119	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0824	Alju-ChrAlju01	6084739	6088088	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0824	52	303	AP2-EREBP Transcription Factor Family	AT5G13910	42.966	2.21e-51	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju01g0824		AP2	2.1e-13	CL0081