Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0805 ATGCCGACGAAGCCACGCCCCTGCACAGTTCACGGCCACGTGCATGGGAAGAGGGCTTTACCGTCTGATCACGATGCATCAGATGCCAATAAAAGAGAAGGTTCATTCATGTCTCAGGCTCACACATCACCATCTGATCAGACCCAAAAGGAGGAAGAAACTTCACCTTCTTCTACTTTTTCGTATCTTATCAGCACCTGTACTGATACTAAAATCTCACATGGTCAAGTAATAAGCACTTCTTCTGGGCTGATCCAGAACCAGGACCCATCTCTGCCTACTCATCAAAATCAAGGCAACGATAATAATGTGAGAAAAAGGAACTATAGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCAGCCGAAATCCGAGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGCACCTTCGAGACCGCCGAGGATGCAGCCGCTGCTTATGATGCTGCTGCTTTAAGGTTCCGAGGAAGCAAAGCTAAGCTTAATTTCCCCGAACGTGTTTCTTTAGCTGCTTCTTCAGCCATCCCTCCGTCGCAAACCCAGCTTCCGGCTGCCCCTTCCACAGCGGCACAAATGGTGCCTCGGCCTCTAGCGCCGTCGACCGACGAAGGGTTCCCGAATCTATTGCAGTACGCGCAGCTGCTTCGTGGCGGCGGCGGCGATGACCTGCAAAGAGCTGCTTCGGGACTTCATAGTCATCATCAGAATGAGCCATTATTTCTGTATGATTCTTCGTCTCCGTTATTCTCGTCATCATCAGGAGTGTCTTCTTCGTCTGCTGCTATATCTGGGTCTGATCAACAACAGGTTCAAGAGCCCCAGAGAGCACAAAAGGGAGATTATGGTTCTTCTTCTTCTGGTTCTTATTTTTTTGATGGAGGAAACACGAGGGGATGA 900 0.4967 MPTKPRPCTVHGHVHGKRALPSDHDASDANKREGSFMSQAHTSPSDQTQKEEETSPSSTFSYLISTCTDTKISHGQVISTSSGLIQNQDPSLPTHQNQGNDNNVRKRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALRFRGSKAKLNFPERVSLAASSAIPPSQTQLPAAPSTAAQMVPRPLAPSTDEGFPNLLQYAQLLRGGGGDDLQRAASGLHSHHQNEPLFLYDSSSPLFSSSSGVSSSSAAISGSDQQQVQEPQRAQKGDYGSSSSGSYFFDGGNTRG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0805 299 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Alju01g0805 299 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Alju01g0805 299 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Alju01g0805 299 MobiDBLite consensus disorder prediction 1 59 - -
Alju01g0805 299 PANTHER DNA-BINDING DOMAIN 51 261 IPR044808 GO:0003700|GO:0009873
Alju01g0805 299 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Alju01g0805 299 MobiDBLite consensus disorder prediction 83 105 - -
Alju01g0805 299 MobiDBLite consensus disorder prediction 16 31 - -
Alju01g0805 299 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Alju01g0805 299 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Alju01g0805 299 MobiDBLite consensus disorder prediction 32 59 - -
Alju01g0805 299 MobiDBLite consensus disorder prediction 251 299 - -
Alju01g0805 299 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Alju01g0805 299 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Alju01g0805 299 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0805 Alju-ChrAlju01 5985393 5987381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0805 88 212 AP2-EREBP Transcription Factor Family AT5G61890 60.938 9.61e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g0805 AP2 5.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0805 01 5985393 5987381 Alju01g0805 01 5985393 5987381 ECH
Alju06g2302 06 49409667 49411564 Alju01g0805 01 5985393 5987381 ECH