Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0799 ATGGAGGGAGAGATACCACCGATAGCTAACGTCGTCTCTTGGATGGAAGGAAAAGTTGAAGATGAAGCCTCTTGGACTAGAACTAACAACGACGGTGAGCTCAAGGACGACGACATTGTTTTGGGGGGCTCTCTAACTTCCTTCAAATCCATGCTCGAATGTGACTGGTACATGAATTCTGCTATCAATTTAGCTCACCAAGACCTCCTCAATCTCCCGAATCCCCAAGAAGCAACTGATATCGTCTTTTGTTCAAACCCAGCTGATAGTTTTCTAGTACAGCCAGTGGATTCGTCGTCTTCCTGTTCACCATCATTCACTCTTGACCCATCTCAGTCACAGCACTTCTTACAGCCCAAATCTTCTTTCCCTTCCCTCTTCAATGTCATCTGCGACAACCCTTATGGCAATGGCTTCGATTTGAGCTCTGACGGTGGGTTCCTTGGTCCGTTCCGGAGCCTTCATTCTTTGAATTCCCCTGTTTTGACGGATTTCTCAGGCTTGAACACTCAATCCCAGATGGGCAGCCTCGAACTGAGTTCAAACTCTGAGTTGCTAGCTACTCGGCTGCTGCCAGCAGCTGAGAATGCAGTCTCGTTTGGTAGCGGGTTTTGTCCGGCGGGTTTAGGAGGGTTTGATAATCCGGGAGGCGCTCTGTTGTCGAACCGGTCTAAGGTTTTGCGACCTCTTGAAGTTTCCCCTCCAGTAGGTGCGGCACCTACTCTCTTTCAGAAGCGAGCAGCGCTCCGCAATAGTTCACTTAGAACTGATAGATTGGGAACTTTGGAGATTTCGGCGTCGAGATTCGAAAATTGTTCTACAAGGCTGGAAAACATGGAGAGGAAGAGAGAGGGAATCGATGATGGCGAAACTGAGGAAGCTTCCATTGACGCATCGGCGCTGAACTATGATTCTGACGAGCTTAATGAGAATGGTAAGATGGAGGAGAATGCTTGTAATGTGGGGAGCAATTCTAATGCCAATAGTTCGGTCACTGGTGGAGACCAGAAGGGGAAGAAAAAAGGGCAGCCAGCCAAAAATCTAATGGCCGAGAGGCGGCGAAGAAAGAAACTAAATGATAGGTTGTACATGCTGAGGTCAGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATGATCTTCATAATGAACTGGAGTCAACTCCGCCTGGCTCATTGCCACCACCTTCTACAAGCTTTCACCCTCTGACACCCACTCCACCAACACTTCCCTGCCGGGTCAAAGAAGAGCTTTGCCCTAGCCTCTCGCCAAGCCCTAAAAACCAAGCTGCAAGGGTGGAGGTTAGGGTAAGGGAAGGGAGAACTGTCAACATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGAGCTTTGGACAACCTTGGATTGGATGTTCAGCAGGCCGTTATCAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCGGAGCAATGCGGAGAACGGGTAGACGTGGTCCCTGAGCAAATCAAAGCAGTACTGATGGATTCAGCTGGTTTCCATGGTATGACATGA 1602 0.4881 MEGEIPPIANVVSWMEGKVEDEASWTRTNNDGELKDDDIVLGGSLTSFKSMLECDWYMNSAINLAHQDLLNLPNPQEATDIVFCSNPADSFLVQPVDSSSSCSPSFTLDPSQSQHFLQPKSSFPSLFNVICDNPYGNGFDLSSDGGFLGPFRSLHSLNSPVLTDFSGLNTQSQMGSLELSSNSELLATRLLPAAENAVSFGSGFCPAGLGGFDNPGGALLSNRSKVLRPLEVSPPVGAAPTLFQKRAALRNSSLRTDRLGTLEISASRFENCSTRLENMERKREGIDDGETEEASIDASALNYDSDELNENGKMEENACNVGSNSNANSSVTGGDQKGKKKGQPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTSFHPLTPTPPTLPCRVKEELCPSLSPSPKNQAARVEVRVREGRTVNIHMFCARRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCGERVDVVPEQIKAVLMDSAGFHGMT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0799 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Alju01g0799 533 Pfam Helix-loop-helix DNA-binding domain 347 391 IPR011598 GO:0046983
Alju01g0799 533 MobiDBLite consensus disorder prediction 316 350 - -
Alju01g0799 533 MobiDBLite consensus disorder prediction 281 302 - -
Alju01g0799 533 Coils Coil 385 405 - -
Alju01g0799 533 FunFam BHLH transcription factor 338 406 - -
Alju01g0799 533 CDD bHLH_AtAMS_like 345 416 - -
Alju01g0799 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 413 IPR036638 GO:0046983
Alju01g0799 533 Gene3D - 335 405 IPR036638 GO:0046983
Alju01g0799 533 SMART finulus 348 397 IPR011598 GO:0046983
Alju01g0799 533 MobiDBLite consensus disorder prediction 316 336 - -
Alju01g0799 533 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 244 529 - -
Alju01g0799 533 CDD ACT_UUR-ACR-like 462 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0799 Alju-ChrAlju01 5923901 5928501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0799 24 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.263 1.19e-146 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g0799 HLH 1.3e-09 No_clan