Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0682 ATGGCTTATTATCTTCCTCTCTTTCTTCTTCTCTCTGCTCTCTCTCTTGTTTCTTCTTTCGCAGTGCCACACCCCGACCTAGTTGCCCAAGACGTTCACAGGAGAATCAATGCGTCTAGAAGAAACCTGGGTTACTTATCTTGCGGAACTGGGAACCCCATAGATGACTGCTGGCGCTGTGACCCCAGTTGGGAGAAGAACCGGCAAAGGCTGGCCGATTGCGCCATTGGGTTCGGTAAGGACGCCGCCGGAGGAAGAAACGGCCGCATCTACGTCGTGTCGGACTCCGGGGACGACGACCCTGTGAACCCCAAGCCAGGTACTCTCAGACACGCCGTTATACAGGATGAGCCACTGTGGATCATCTTCAACAGGGACATGGTGATCAACCTGAAGCAAGAGCTCATCATGAACTCCTTCAAGACCATCGACGGAAGAGGAGCGAGTGTTCACATCGCCGACGGCGGTTGCATTACCCTCCATTACGTCAACAACGTGATCATCCACGGCATTCACATCCACGACTGTAAGCCCACGGGGAACACGGAGATCAGAGACTCTCCCACTCACTCAGGCTTCTGGACGGTGTCGGACGGAGACGGCATCTCCATTTTCAACTCCAAGGACATATGGGTGGACCACTGCTCCTTATCGAACTGCCACGACGGGCTCATCGACGCAATCCACGGATCCACGGCGATCACCATCTCCAACAACTACATGACGCATCACGACAAGGTGATGCTGTTGGGTCACAGCGACGAGTACACGCAGGACAGGGAGATGCAGGTGACGGTGGCGTTTAATCACTTCGGAGAAGGGCTGGTGCAGAGAATGCCGAGGTGCAGGCACGGGTATTTTCACGTGGTGAACAACGATTACACTCACTGGGAAATGTACGCCATCGGAGGCAGTGCGGGTCCCACCATTAACAGCCAAGGGAACAGGTTTCTTGCTCCTGATAATAGGGCCAGCAAAGAAGTGACGAAGCGCGAGGACGCTCCCGAGGGCGAGTGGAGCAACTGGAATTGGAGATCGGAAGGGGATCTTTTCTTGAACGGCGCTTTCTTCACGCAATCAGGTGCTGCTGCTTCTTCACCCTATGCTAGAGCGTCGAGTCTGAGTGCTAGGCCGTCTTCTCTGGTTGGCTCTATCACTCTCAATGCTGGTGCACTTATCTGCAGAAAGGGCACTCGTTGCTGA 1203 0.5445 MAYYLPLFLLLSALSLVSSFAVPHPDLVAQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPSWEKNRQRLADCAIGFGKDAAGGRNGRIYVVSDSGDDDPVNPKPGTLRHAVIQDEPLWIIFNRDMVINLKQELIMNSFKTIDGRGASVHIADGGCITLHYVNNVIIHGIHIHDCKPTGNTEIRDSPTHSGFWTVSDGDGISIFNSKDIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDREMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPDNRASKEVTKREDAPEGEWSNWNWRSEGDLFLNGAFFTQSGAAASSPYARASSLSARPSSLVGSITLNAGALICRKGTRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Alju01g0682 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Alju01g0682 400 PANTHER PECTATE LYASE 18-RELATED 32 398 IPR045032 GO:0030570
Alju01g0682 400 Pfam Pectate lyase 134 317 IPR002022 -
Alju01g0682 400 Gene3D - 51 393 IPR012334 -
Alju01g0682 400 SMART amb_all 126 323 IPR002022 -
Alju01g0682 400 SUPERFAMILY Pectin lyase-like 29 395 IPR011050 -
Alju01g0682 400 FunFam Pectate lyase 51 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0682 Alju-ChrAlju01 5112308 5113608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0682 1 400 Polysaccharide Lyase AT5G63180 73.762 0.0 616