Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0656 ATGTCGAAATCATTATGCCTAACTCACGTATCGTTCCTCATATCCAATTCTAGAGCCATGGCTTCTGCAAGAGTTTTCTATCATGCGCTTCCATCTTCAAAATTCACATCCTTCAACAAAGCTAACACTTTCTCCCTATCACCCTCCCTACGAACCTTCTCCACCACTCGAACACCATATCCACTTCAGTACGAGATGATTATCAACCGTCCAGTCAATCCTGTGCATGCCCATTCTCGCCGGCGACCTGTTCGACAAAATGACTCCAGTGCAGAGGGCTTCCCTGAATCCGAGAATCCGGAAGAGTCCGTTTCTCCAGAAGAGGCCGTTTCTGAATTGGGGTTAGATAGCTGGGTTGATCGGAAATTGGCTTCTGAGAAAGAAGCTGACCAACCCGGTTGCCAAAAATTGGAGTTTGACAAGGCTAAGAGAAAATATTACAGAAAACGGAGGAAGAGGATGTATGGATCAGACTCTGATGAAGAAAATAGAGGACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTTGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTACGATGCGTTTTGTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGTTGGAGAAGAAATATTTTCCTGATCAGTGTCTTGATAAGGCGTTCCTAGAACCGGGAGAATCAAATACAAACGTGAATGTAAATACAGATACAAAGACTAAGAGCAAGGTGAGAGGGGAAAAGAAGAGAGTCAGGGAAGATGCAAGGGAGAAAAAAGATGTAACTAGTGATGAAAGAAATGATAAGAAGTTGATATTCTTCGAGGAGAAGCAAGAAGAAGAAAAGGATAACAGAGGATTGGTCAAGGAAACAAGAGAAGATCTAACCGAAAAGAAGGTCGAAGAGTTCTTTAAGTATTTGAAGAAAATTCCGAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGCGTCAAGGAATTCTGGGCTTCCTCCAAGATGGGATGGTCCTCATGGAACCGTTGTTTTAGTAAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGCGGAAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTAGGTCATGCCGGAACTCTTGATCCAATGGCAACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAAATAGTAGATAGATATCAAGGGATGATTAAGGGCTATAGTGGAGTTTTCCGTCTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCGGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAACTGCAGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCCCCGATGTTCTCTGCTATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATATCAATTTTCCAGTTTGACACAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTTACATGTTCCAAAGGGACGTATATTCGTTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGGAGAGATTCAATAGGAGAATATTCAGCAGATGATGCATGGGTCTTCGCAGAGCTGGAAGAGGCTATTTCCAAAAGCTATATATTTGTTTCATATAAAGCATCCAATATTGAGGAAAATGTTTCTGTAATATTCATTAATGAATTATTCAATTCTTTGGACGCAACAATCGCAAATGGTTTCGGAGAATCTGTACTATTTATAATGATCTTTGGCCCTCAGATTATTTTCTTCAACTTTGTTAGCAGAGTCTGTTGTCTGGACATGTATGCGAGAAATAGATACCCAGAGGAACTGAGTAGAGTTCAAGCAGCAATATTTTTGTACTCAGACTTTTAG 1944 0.4177 MSKSLCLTHVSFLISNSRAMASARVFYHALPSSKFTSFNKANTFSLSPSLRTFSTTRTPYPLQYEMIINRPVNPVHAHSRRRPVRQNDSSAEGFPESENPEESVSPEEAVSELGLDSWVDRKLASEKEADQPGCQKLEFDKAKRKYYRKRRKRMYGSDSDEENRGPEEKFVELKPEVVELPTLHKREEELYFYDAFCYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNTNVNVNTDTKTKSKVRGEKKRVREDAREKKDVTSDERNDKKLIFFEEKQEEEKDNRGLVKETREDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLASRNSGLPPRWDGPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKIVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKTAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWVFAELEEAISKSYIFVSYKASNIEENVSVIFINELFNSLDATIANGFGESVLFIMIFGPQIIFFNFVSRVCCLDMYARNRYPEELSRVQAAIFLYSDF 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0656 647 NCBIfam tRNA pseudouridine(55) synthase TruB 345 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju01g0656 647 Hamap tRNA pseudouridine synthase B [truB]. 343 612 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju01g0656 647 Gene3D Pseudouridine synthase 341 578 - -
Alju01g0656 647 MobiDBLite consensus disorder prediction 230 266 - -
Alju01g0656 647 SUPERFAMILY Pseudouridine synthase 345 566 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju01g0656 647 Pfam tRNA pseudouridylate synthase B C-terminal domain 516 559 IPR032819 -
Alju01g0656 647 Pfam TruB family pseudouridylate synthase (N terminal domain) 365 515 IPR002501 GO:0006396
Alju01g0656 647 FunFam tRNA pseudouridine synthase B 340 562 - -
Alju01g0656 647 MobiDBLite consensus disorder prediction 75 109 - -
Alju01g0656 647 CDD PseudoU_synth_EcTruB 346 557 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju01g0656 647 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 215 568 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Alju01g0656 647 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0656 Alju-ChrAlju01 4935691 4939989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0656 311 537 NAC Transcription Factor Family AT3G57150 30.837 4.26e-20 92.4