Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0644 ATGGAATCACCCATTAACGACCCTGCTGTTGACGGAGAAATCAACGATGCGAGGTCTTTAGGCCACAGAGAAGAGGAGGAGGAGAAGTCTCAGCCTCTTACCGGCGACGGGGCAAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGAGAGATCACCGACTCTGTAATAATGAAGGACAGGAAGACCGGGCAACCCCGTGGATTTGGTTTTATAACTTACGCAGATCCCTCTGTGGTTGATAAGGTCATCGAGGATACTCATGTTATCAATGGAAAACAAGTGGAAATTAAACGTACTATACCCAGAGGAGCTATTGGCTCTAAGGATTTCAGGACGAAGAAAATTTTTGTGGGTGGAATTCCCTCAACTGTGACTGAAGATGAGTTTAGAGACTTCTTTAATCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCTCGTGGCTTTGGGTTTATTACTTTTGAGACTGAGGATGCTGTTGAAGATCTCCTGGCTAAGGGGAACAAAATAGACTTTGCTGGGTCTCAGGTGGAAATAAAAAAGGCTGAGCCAAAGAAACCAAACCCATCACCAGCCTCCTCCAAGCGCTATAATGACTCGAGATCTTCATTTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTAGTGGCTTTGATGTTGGGGGATATAGATCAGGTGGTGTCTATGGTGGTAGGGGTCCTTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGCATATGCTGGGGCCATGGGGCCTTATAGAGGAGATCCCTCCCTTGGGTACTCTAGCCGATATGGAGGTGGATTTAGCAGAGGTTATGACCTTGGAGGATATGGTGGACCTAGTGAGGGTTATGCGGGATATGGTGGTGTTGGTTCTTCAGGTGGTGCCTATGGAAGTGGGTATGACACTGGCTTGGGGGGTGGATATGGCGGCAGTGGCAGCAGTGGTGTTGGGGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATACCATCCTTACGGAAGATAG 1107 0.4734 MESPINDPAVDGEINDARSLGHREEEEEKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAIGSKDFRTKKIFVGGIPSTVTEDEFRDFFNHYGEVKDHQIMRDHSTNRSRGFGFITFETEDAVEDLLAKGNKIDFAGSQVEIKKAEPKKPNPSPASSKRYNDSRSSFGGGYGDAYDGFGSGFDVGGYRSGGVYGGRGPYGGYGGEFGGYGAYAGAMGPYRGDPSLGYSSRYGGGFSRGYDLGGYGGPSEGYAGYGGVGSSGGAYGSGYDTGLGGGYGGSGSSGVGGSFYGSRGGYGGAGSGRYHPYGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0644 368 Gene3D - 41 118 IPR012677 -
Alju01g0644 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 23 368 - -
Alju01g0644 368 SMART rrm1_1 130 203 IPR000504 GO:0003723
Alju01g0644 368 SMART rrm1_1 42 113 IPR000504 GO:0003723
Alju01g0644 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Alju01g0644 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Alju01g0644 368 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Alju01g0644 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Alju01g0644 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Alju01g0644 368 MobiDBLite consensus disorder prediction 201 223 - -
Alju01g0644 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 120 - -
Alju01g0644 368 Gene3D - 119 223 IPR012677 -
Alju01g0644 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 121 242 - -
Alju01g0644 368 MobiDBLite consensus disorder prediction 16 32 - -
Alju01g0644 368 SUPERFAMILY RNA-binding domain, RBD 125 237 IPR035979 GO:0003676
Alju01g0644 368 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0644 Alju-ChrAlju01 4856289 4859674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0644 41 208 Eukaryotic Initiation Factors Gene Family AT1G71770 25.281 2.19e-10 60.5