Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0609 ATGGATTTTGAGCCAAACTTCCATGAAAGCTTCTCTCTGCTTTCTGGACTTTTCCCGGAAAATCCCCCAAAATCTCAACCACTATCACTCGCAATGCCACACATGCATGATCAACCTCCTCCTCCTTCCCACAATAATACGCCAGTACTGTTTCCCACCGACCAAAATCTCCACCACCACCACCACCACCACTTCCAACACTACCCTCACCATCAGCTGGATCTGAACGGGTCAGACCCGAACTCGATCTTCCTGAAGCAGGCTCCATATCCTCACTCTCATCCTTTCGATCCTGCGTACCCAAACGAGCCCTTCAAAGTCGACGCCTTGCATGGCGGTCGGGCCTTCTGGGATTTCTCGCACAAGCTTTCTCTTCCATCCGACCCGTCCCTGACCCCACAGATGGTCCCACTACACCATCCAGCTTATGGATCATCATCATTGAAGCCTAAGCCTCATCATCAGGACGAACTTCTTTTGTTCTTCCCTGAGAATAATAATGATCATAATAATCGCTGGCAAGACGAAGCTCGTGCTGATCATAACAATGACAGGAAGATGAAGAAGCAGCAGATGCACAAAGGTGGCCTTCTCAAGAATACAACCATCATCAAAGGCCAGTGGACACAAGAAGAAGATAGAATGTTGGTGCAATTGGTGGAGAGGTTTGGGATGAAAAAATGGTCACAAGTCGCAAAGGCTTTGAATGGAAGGGTGGGAAAGCAGTGTAGAGAGAGGTGGCATAACCATCTGCGTCCGGACATTAGGAAGGAGGCATGGACGGAGGAAGAAGACATTATTCTGATCGAAGCTCACAAGGAAGTCGGCAACAAGTGGGCGGAAATCGCTCGCTGGCTTCCGGGAAGGACGGAAAACACCATCAAGAACCACTGGAACGCCACAAAGCGCCGCCAAAACGCCAAGAAACACAGAAACAGAGCATCCGCATCAAGGCCTTCACTTCTTCAGGAATACATCAAGCAAGTCACCGCATGCCAAGGAACCTCGAGGCAGCTTCAGATCAAACAAGAACGAGCCGACGAGCTGGCATACTATAACAACAATCGCACGATGAACAACGTGAGAGTTCGCTACGAAAGCGCCTCGGATGATGATGGCGACAGCAGCTCCGGTGATTGGGAGGTTGAGATGTATGAGGCGGCGGAGGAAGAGGAAGAGAAGGAGGCGTATAATAATGAGAATGAGAATGATAATGGCGGGGAAGAGGAGGTGGCGGCGGAGATGAACGGGTTTGTGGGAGAGGATGGGATGAAGAAAGAGATGGATCTGATGGAGATGATTTGTGGGCCCAGGAAGTACTGA 1323 0.5011 MDFEPNFHESFSLLSGLFPENPPKSQPLSLAMPHMHDQPPPPSHNNTPVLFPTDQNLHHHHHHHFQHYPHHQLDLNGSDPNSIFLKQAPYPHSHPFDPAYPNEPFKVDALHGGRAFWDFSHKLSLPSDPSLTPQMVPLHHPAYGSSSLKPKPHHQDELLLFFPENNNDHNNRWQDEARADHNNDRKMKKQQMHKGGLLKNTTIIKGQWTQEEDRMLVQLVERFGMKKWSQVAKALNGRVGKQCRERWHNHLRPDIRKEAWTEEEDIILIEAHKEVGNKWAEIARWLPGRTENTIKNHWNATKRRQNAKKHRNRASASRPSLLQEYIKQVTACQGTSRQLQIKQERADELAYYNNNRTMNNVRVRYESASDDDGDSSSGDWEVEMYEAAEEEEEKEAYNNENENDNGGEEEVAAEMNGFVGEDGMKKEMDLMEMICGPRKY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0609 440 ProSiteProfiles Myb-like domain profile. 252 302 IPR001005 -
Alju01g0609 440 ProSiteProfiles Myb-like domain profile. 200 251 IPR001005 -
Alju01g0609 440 SUPERFAMILY Homeodomain-like 203 298 IPR009057 -
Alju01g0609 440 MobiDBLite consensus disorder prediction 386 409 - -
Alju01g0609 440 CDD SANT 259 302 IPR001005 -
Alju01g0609 440 PANTHER MYB PROTEIN-RELATED 191 320 - -
Alju01g0609 440 FunFam Transcriptional activator Myb isoform A 204 257 - -
Alju01g0609 440 SMART sant 256 304 IPR001005 -
Alju01g0609 440 SMART sant 204 253 IPR001005 -
Alju01g0609 440 Gene3D - 204 256 - -
Alju01g0609 440 MobiDBLite consensus disorder prediction 386 423 - -
Alju01g0609 440 MobiDBLite consensus disorder prediction 18 81 - -
Alju01g0609 440 CDD SANT 208 251 IPR001005 -
Alju01g0609 440 Coils Coil 385 405 - -
Alju01g0609 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 306 IPR017930 -
Alju01g0609 440 Pfam Myb-like DNA-binding domain 208 266 - -
Alju01g0609 440 Gene3D - 258 328 - -
Alju01g0609 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 255 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0609 Alju-ChrAlju01 4519928 4522146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0609 199 329 MYB Transcription Factor Family AT4G18770 69.466 1.49e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g0609 Myb_DNA-bind_6 2.8e-19 CL0123