Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0608 ATGCCAATAGCAAATAAATTGGCCCTTTGTTTCGCGGAGATTCTACGACCCCTTCCGGCTTCCTTAAGGACATTTAACTCACTTGTCAGGTCGGTTTATTGGGACTATATTGCCAGTTCCCTTGCAATGGCTACTGCAACGGCCTCTTCAGTGGGTCCAAGATATGCACCTCATGACCCAACACTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACTGGTTATCTCTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGGCCTACAAACTCAGCTCCCCAGCCAAAGTCTTCTTCAGTGCCCAGTTCTTCAGTTCAGGTCCAACAGTCATCACAAGGAACTCGTAGGGACCACAGTCCTGATTTACATGATAGGTACGGTAGAGACAACGTTGGTGGATCAAATTCTGAAGCTGGATCTAGGAATCATCAGAATCCAAAAGGTGGGAGTCTTAGTTCTCATAATGTTCCAAACGGAATGCACATGACCAGAAATGTTAGCTCTTCTATCAAAAACCATGGATCATCAGATGCAGACGTCGGATTAACTCCAGAGTCTTATCGACATCACCATGAAATAACTGTGTCTGGGGATAATGTTCCTCCGCCTTTCACATCATTTGGCTCTACTGGTTTTCCATCAGAGATTCTCAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCCATTCAGGCACAATCATGGCCCATTACTCTTCAAAGTAGAGACATAGTTGCTATTGCCAAAACAGGCTCTGGGAAAACCCTGGGATATTTAATTCCAGGATTCATCCATCTCAAACGTGTTGGCAATGACTCCAGATTGGGCCCCACTGTACTGGTACTATCACCTACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAGTCATCCAGAATTTCTTGTGTGTGTTTGTATGGGGGAGCCCCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATTCTGGAGATGAGGAGAATTAGTCTTCATCAGGTTTCGTACCTTGTACTAGATGAGGCTGACCGCATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGGTTGTGAAGGAAGTGCCTGCACGGCGGCAAACCCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTTAACATTGGCAATGTCGATGAGCTTGTTGCTAACAAGTCCATTACGCAGCATATAGAAGTATTGGCACCAATGGAGAAACACAGACGGTTGGAGCAAATATTGCGGTCACAGGATCCAGGATCAAAAATAATTGTTTTTTGTTCTACCAAGAAGATGTGTGATCAGCTTGCACGTAATCTTACACGCCAGTTTGGGGCTGCTGCGATTCATGGGGATAAATCCCAGTCTGAGAGGGACCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACTGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGGGTCGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTCCATAGGATTGGAAGGACAGGGAGGGCAGGAGCAACTGGCTTGGCATACACGTTTTTTGGAGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTGGAAGGTGCAAGTCAGCGAGTCCCATCAGAACTCCGTGATTTGGCATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTTGTGGGGGACGCAGCGATTGTGGATCTGGATATGGGGGACGGGGTGGCGATTCTGGATATGGGGGAAGGGGAGCTACTCCTGGTGGCAGAGGTGGGGGCCGTGGATTTGACTATGATTACCAGAGGAATGATCGTACTTGCTATGGACAAGATGCGGATACCCATGAGAAGTATGATAAAGGAAGGAGCCCTGATGGAGGTAGAAACTTCTACCGTGATCGAAGCCGCAGTCGAAGTCCCAACAGGCATGAAAGGGCTGCACCACCTTCCCAAGGTTTTAGTTTTCACCAGGCAATGATGGAACCTAAAGGGGGCAGTGATCATGACAAGAGCTTTGATCACAATAGTAACCGAAGTCGGAGCCCTGTTAAGCATGATAGGGCGCCATCTGGCCGTGAACGTTCCCCAGTCTATAGTTTTCATGAGATGATGATAAAACGTGGTCAATCAAGGCACACATTTAGTACTCACCGGACCAGTTCACCATCGTCCCCCAGTGGTGGTGGGTCAGACAGAAATCCCCGATCTCCTAGAAATAAGTTGGATGATAAGAGATATGATGGGGCTAATTCTTCCTACCCTGGAGAAGAGGAGGAAGGGATGATTCGTCAAGATGACGATGCTGCATATGGGGTTGCGGATTAG 2454 0.4739 MPIANKLALCFAEILRPLPASLRTFNSLVRSVYWDYIASSLAMATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSAPQPKSSSVPSSSVQVQQSSQGTRRDHSPDLHDRYGRDNVGGSNSEAGSRNHQNPKGGSLSSHNVPNGMHMTRNVSSSIKNHGSSDADVGLTPESYRHHHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPITLQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKVVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGASQRVPSELRDLASRGGGMNRSRRWGSGGCGGRSDCGSGYGGRGGDSGYGGRGATPGGRGGGRGFDYDYQRNDRTCYGQDADTHEKYDKGRSPDGGRNFYRDRSRSRSPNRHERAAPPSQGFSFHQAMMEPKGGSDHDKSFDHNSNRSRSPVKHDRAPSGRERSPVYSFHEMMIKRGQSRHTFSTHRTSSPSSPSGGGSDRNPRSPRNKLDDKRYDGANSSYPGEEEEGMIRQDDDAAYGVAD 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0608 817 Gene3D - 57 108 - -
Alju01g0608 817 FunFam probable ATP-dependent RNA helicase DDX17 179 417 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 137 180 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 757 776 - -
Alju01g0608 817 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 360 368 IPR000629 -
Alju01g0608 817 ProSiteProfiles WW/rsp5/WWP domain profile. 60 94 IPR001202 GO:0005515
Alju01g0608 817 SMART ww_5 61 94 IPR001202 GO:0005515
Alju01g0608 817 MobiDBLite consensus disorder prediction 705 735 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 120 134 - -
Alju01g0608 817 FunFam ATP-dependent RNA helicase RhlB 418 590 - -
Alju01g0608 817 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 414 IPR014001 -
Alju01g0608 817 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 169 587 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 618 817 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 582 606 - -
Alju01g0608 817 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 587 IPR001650 -
Alju01g0608 817 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 209 237 IPR014014 GO:0003724
Alju01g0608 817 SMART ultradead3 228 431 IPR014001 -
Alju01g0608 817 MobiDBLite consensus disorder prediction 640 686 - -
Alju01g0608 817 MobiDBLite consensus disorder prediction 778 795 - -
Alju01g0608 817 CDD SF2_C_DEAD 428 557 - -
Alju01g0608 817 Gene3D - 187 418 IPR027417 -
Alju01g0608 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 564 IPR027417 -
Alju01g0608 817 Pfam DEAD/DEAH box helicase 233 403 IPR011545 GO:0003676|GO:0005524
Alju01g0608 817 SMART helicmild6 468 548 IPR001650 -
Alju01g0608 817 Pfam Helicase conserved C-terminal domain 440 548 IPR001650 -
Alju01g0608 817 ProSitePatterns WW/rsp5/WWP domain signature. 66 92 IPR001202 GO:0005515
Alju01g0608 817 MobiDBLite consensus disorder prediction 89 119 - -
Alju01g0608 817 CDD WW 63 93 IPR001202 GO:0005515
Alju01g0608 817 MobiDBLite consensus disorder prediction 89 187 - -
Alju01g0608 817 SUPERFAMILY WW domain 54 94 IPR036020 GO:0005515
Alju01g0608 817 Gene3D - 419 589 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0608 Alju-ChrAlju01 4506100 4513438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0608 207 586 Eukaryotic Initiation Factors Gene Family AT3G19760 33.681 1.88e-65 222