LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0605	ATGGCTGGTGGTGAGTCAATGATGGTTGATAAACTCCCTGAGGAGATCAATGAAATGAAGATCAAGGACGAAAAGGAAATGGAGACAGCAATGGTAGATGGAAACGGAACTGAAACTGGCCACATCATTGTGACTACTATTGGTGGTCGAAATGGTCAACCCAAACAGACCATAAGTTACATGGCTGAGCGTGTTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCCAAGTGTCTTGAAACTGGAGAAACAGTGGCAATCAAGAAGGTCTTGCAGGATAAAAGATACAAAAACCGTGAATTGCAAACAATGCGCCTTCTTGATCATCCTAATGTTGTGTCACTCAAACATTGCTTCTTTTCCACCACAGATAAGGATGAACTATATCTCAATCTGGTACTCGAGTATGTACCTGAGACTGTATATCGTGTGGTAAAGCACTATAGCAAGGCAAATCAGCGGATGCCCTTGATATATGTTAAACTCTACACATATCAGATTTGCAGAGCTTTGGCTTATATTCATGGATGTGTTGGGGTGTGCCACAGGGATATTAAACCTCAGAACCTACTGGTTAATCCTCACACTCATCAGGTCAAGCTTTGTGATTTTGGAAGTGCAAAAGTTCTGGTCAAAGGTGAACCCAATATATCATATATTTGCTCTCGTTACTACCGAGCACCTGAACTCATTTTTGGGGCAACCGAATATACAACTGCAATTGATATGTGGTCTGTGGGTTGTGTCCTGGCTGAGCTGCTCCTAGGACAGCCTCTATTCCCTGGGGAAAGTGGTGTTGATCAGCTTGTTGAGATTATCAAGGTGCTCGGGACGCCAACTCGTGAGGAGATAAAATGCATGAACCCAAACTATACTGAGTTTAAGTTTCCTCAAATCAAGGCGCATCCTTGGCATAAGATATTTCATAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTCTCCAGACTCCTCCAGTACTCACCAAATTTACGATGCACTGCTTTGGAGGCTTGCGTCCACCCATTTTTTTATGAACTTCGTGATCCTAATACTCGTCTCCCCCACGGCCGCCCTTTGCCGCCCCTCTTCAACTTTAAACCTCATGAGCTAAAAGGAGCAACCTTGGAGCTTATATGCAAACTTGTTCCAGAACATGCTAGGAAGCAGTGTCCTTCGCTTAACTTCTGA	1191	0.44	MAGGESMMVDKLPEEINEMKIKDEKEMETAMVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACVHPFFYELRDPNTRLPHGRPLPPLFNFKPHELKGATLELICKLVPEHARKQCPSLNF	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0605	396	SMART	serkin_6	60	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0605	396	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	24	390	-	-
	Alju01g0605	396	FunFam	Shaggy-related protein kinase kappa	140	388	-	-
	Alju01g0605	396	CDD	STKc_GSK3	55	347	IPR039192	-
	Alju01g0605	396	FunFam	Glycogen synthase kinase-3 beta	44	139	-	-
	Alju01g0605	396	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	181	193	IPR008271	GO:0004672\|GO:0006468
	Alju01g0605	396	ProSiteProfiles	Protein kinase domain profile.	60	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0605	396	Gene3D	Phosphorylase Kinase; domain 1	44	139	-	-
	Alju01g0605	396	Pfam	Protein kinase domain	60	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g0605	396	Gene3D	Transferase(Phosphotransferase) domain 1	140	388	-	-
	Alju01g0605	396	ProSitePatterns	Protein kinases ATP-binding region signature.	66	90	IPR017441	GO:0005524
	Alju01g0605	396	SUPERFAMILY	Protein kinase-like (PK-like)	59	368	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0605	Alju-ChrAlju01	4492148	4496100	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0605	66	347	Core Cell Cycle Gene Families	AT1G76540	34.828	1.36e-55	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Alju01g0605		Pkinase	3.7e-65	CL0016