LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g0602	ATGGACAAGAAACCGTACAGTTCATCGTCGTCATCTCAGGACCCAGAAGTGAGAAAAGGGCCTTGGACCATGGAAGAAGACTTGATCTTGATCAACTATATAGCAAATCACGGTGAAGGTGTCTGGAACTCCTTGGCTAAAGCTGCTGGTCTTAAGCGAACCGGGAAGAGTTGTCGGCTCCGGTGGCTAAATTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCAGAGGAACAGCTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGGTCAAAGATTGCGAAGCATCTACCAGGAAGAACTGATAACGAGATTAAGAACTATTGGAGGACTAGGATTCAGAAGCACATTAAGCAGGCTGAGAGTAGCTGCTCCCAGTCGCAGCAACATCAACAACACGCGCCGCTAAGTTCTGAGACGGCAGATCATCAGCAAGCCACCACCAGCCACGTGTCCTACACCATGGCTGATTCTCAGCCGATGGATACCTACTCTCCCTCCTCCTTTAATCATCAAGCGGCTCTCACTGACCATCAGCCCTTCCCCACCCATCCCTTCCCCACCGTACTGGATCAGTCCTCCATTAACTACTGGAGCATGGAGGATCTCTGGTCTAATATGCAAATACTTAACGGCGATTAA	654	0.4893	MDKKPYSSSSSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAESSCSQSQQHQQHAPLSSETADHQQATTSHVSYTMADSQPMDTYSPSSFNHQAALTDHQPFPTHPFPTVLDQSSINYWSMEDLWSNMQILNGD	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g0602	217	FunFam	Myb transcription factor	19	71	-	-
	Alju01g0602	217	ProSiteProfiles	Myb-like domain profile.	14	66	IPR001005	-
	Alju01g0602	217	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	67	121	IPR017930	-
	Alju01g0602	217	Gene3D	-	19	71	-	-
	Alju01g0602	217	MobiDBLite	consensus disorder prediction	123	153	-	-
	Alju01g0602	217	Gene3D	-	76	148	-	-
	Alju01g0602	217	ProSiteProfiles	Myb-like domain profile.	67	117	IPR001005	-
	Alju01g0602	217	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	14	174	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Alju01g0602	217	SUPERFAMILY	Homeodomain-like	16	113	IPR009057	-
	Alju01g0602	217	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	14	66	IPR017930	-
	Alju01g0602	217	CDD	SANT	76	115	IPR001005	-
	Alju01g0602	217	Pfam	Myb-like DNA-binding domain	19	66	IPR001005	-
	Alju01g0602	217	Pfam	Myb-like DNA-binding domain	72	115	IPR001005	-
	Alju01g0602	217	FunFam	Myb-related protein 305	76	155	-	-
	Alju01g0602	217	CDD	SANT	21	66	IPR001005	-
	Alju01g0602	217	SMART	sant	71	119	IPR001005	-
	Alju01g0602	217	SMART	sant	18	68	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g0602	Alju-ChrAlju01	4452750	4456045	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g0602	4	217	MYB Transcription Factor Family	AT3G01530	56.075	3.38e-78	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju01g0602		Myb_DNA-binding	7.5e-15	CL0123